PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g013370.1 | ||||||||
Common Name | MTR_2g013370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 275aa MW: 30813.2 Da PI: 8.4729 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 112 | 2.6e-35 | 44 | 100 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +a++cprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGg rknk++ Medtr2g013370.1 44 EAVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGG-VRKNKRV 100 6899********************************************96.5777764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-22 | 36 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-31 | 45 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.748 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGLSSKQVSS RGVDWNQTLL QDQNLELPKT LPMRKQQQQN HQLEAVNCPR CDSTNTKFCY 60 YNNYNKSQPR HFCRACKRHW TKGGTLRNVP VGGVRKNKRV KISTSISTTS KTTISTSFTT 120 TSNANRLNKK NTPSSMHESL IHPPSFLPPQ NLISTKDQSE GNNEEFGIGN GMFLSSSMPF 180 HQNQSFIFPF SNSSTLRSNN GYNYGDEEFK IMEESTINNS AMPSTSGSGT ITQPWEIPAT 240 SSGMDMSNYW SWEDIDSLVS TDLNVPWDDS DIKP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24756 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g013370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF221751 | 1e-42 | EF221751.1 Glycine max Dof6 transcription factor (Dof6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003593557.1 | 0.0 | dof zinc finger protein DOF1.4 | ||||
TrEMBL | G7IPR3 | 0.0 | G7IPR3_MEDTR; Dof domain zinc finger protein | ||||
STRING | AES63808 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5107 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 1e-29 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g013370.1 |
Entrez Gene | 11446803 |
Publications ? help Back to Top | |||
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