PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g011940.3 | ||||||||
Common Name | MTR_2g011940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 649aa MW: 71720 Da PI: 7.7404 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 353 | 452 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+l+ sd+++ grlvlpkk+ae++ ++++e+ l++ d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e+ Medtr2g011940.3 353 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEG 444 99**************************555566778***************9989999999***9.********************766.666 PP ..EEEEE- CS B3 91 elvvkvfr 98 +lv+++++ Medtr2g011940.3 445 RLVMGFRK 452 67777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-30 | 349 | 455 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-20 | 350 | 453 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.21E-22 | 351 | 452 | No hit | No description |
Pfam | PF02362 | 9.6E-16 | 353 | 452 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.096 | 353 | 454 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-20 | 353 | 453 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.424 | 580 | 630 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.6E-11 | 585 | 627 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MITDQVAVTM ASSSVPSSSS SSISSSTLKR CFNSDCKDFR STKKGWRLRT GDLAQLCDRC 60 GSAFEEGRFC DIFHANTSGW RNCETCRKRI HCGCIVSSST FVLLDPGGIE CFTCARKNVI 120 LPSNLPWPQS LSLTNRLSER YRDMSGKSWS QLAGSGPVPW KQAPSLFNSA SSSDQPPAVH 180 SLVDLSNNFD KIYGNERLPP SSLEKKNEDL AGISANWNVK LGSSEMVLMN GMRNEDKSGP 240 CLNMCQQPHT LKEDSSSQPF GLSVPYSSPN ERNGQIGVTG IHPQQTPPHL GKQFGGTMHL 300 PLDSSGEAQV RNGRPRADAR GRSQLLPRYW PRCTELELQQ ISVDSNSVIT PLFQKTLSAS 360 DAGRIGRLVL PKKCAETYFP PISQPEGLPL KILDAKGKEW IFQFRFWPNN NSRMYVLEGV 420 TPCIQSMQLQ AGDTVTFSRL EPEGRLVMGF RKATNPLPSD QDNEANKTGN GFSAPEVELA 480 DPSSWSNVDK SGYIAKEALG SKSLISRKRK NNILGSKSKR LKIENEDIIE LKITWQEAQG 540 LLRPPPNHVP SIVVIEGFEF EEYEDAPVLG KPSIFTSDNM GERIQWARCE DCLKWRKLPA 600 CALLPAKWTC SDNSWDPERS SCSAAQELTT EQLENLLPPC NSEEGKTT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-62 | 331 | 455 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 30 | TLKRC |
2 | 507 | 521 | KRKNNILGSKSKRLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24767 | 0.0 | root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g011940.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 3e-69 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003593434.2 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A072VEC0 | 0.0 | A0A072VEC0_MEDTR; AP2/B3 transcription factor family protein | ||||
STRING | AES63685 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-156 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g011940.3 |
Entrez Gene | 11434350 |
Publications ? help Back to Top | |||
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