PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g011940.2
Common NameMTR_2g011940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 666aa    MW: 73574.3 Da    PI: 7.6947
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g011940.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18353452198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e+
  Medtr2g011940.2 353 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEG 444
                      99**************************555566778***************9989999999***9.********************766.666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  Medtr2g011940.2 445 RLVMGFRK 452
                      67777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-30349455IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-20350453IPR015300DNA-binding pseudobarrel domain
CDDcd100174.50E-22351452No hitNo description
PROSITE profilePS5086311.096353454IPR003340B3 DNA binding domain
SMARTSM010191.4E-20353453IPR003340B3 DNA binding domain
PfamPF023621.0E-15353452IPR003340B3 DNA binding domain
PROSITE profilePS5105013.424580630IPR011124Zinc finger, CW-type
PfamPF074967.9E-11585627IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MITDQVAVTM ASSSVPSSSS SSISSSTLKR CFNSDCKDFR STKKGWRLRT GDLAQLCDRC  60
GSAFEEGRFC DIFHANTSGW RNCETCRKRI HCGCIVSSST FVLLDPGGIE CFTCARKNVI  120
LPSNLPWPQS LSLTNRLSER YRDMSGKSWS QLAGSGPVPW KQAPSLFNSA SSSDQPPAVH  180
SLVDLSNNFD KIYGNERLPP SSLEKKNEDL AGISANWNVK LGSSEMVLMN GMRNEDKSGP  240
CLNMCQQPHT LKEDSSSQPF GLSVPYSSPN ERNGQIGVTG IHPQQTPPHL GKQFGGTMHL  300
PLDSSGEAQV RNGRPRADAR GRSQLLPRYW PRCTELELQQ ISVDSNSVIT PLFQKTLSAS  360
DAGRIGRLVL PKKCAETYFP PISQPEGLPL KILDAKGKEW IFQFRFWPNN NSRMYVLEGV  420
TPCIQSMQLQ AGDTVTFSRL EPEGRLVMGF RKATNPLPSD QDNEANKTGN GFSAPEVELA  480
DPSSWSNVDK SGYIAKEALG SKSLISRKRK NNILGSKSKR LKIENEDIIE LKITWQEAQG  540
LLRPPPNHVP SIVVIEGFEF EEYEDAPVLG KPSIFTSDNM GERIQWARCE DCLKWRKLPA  600
CALLPAKWTC SDNSWDPERS SCSAAQELTT EQLENLLPPC NSGLNCFIPS LEQMSQIPCH  660
GLCNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-623314552126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12630TLKRC
2507521KRKNNILGSKSKRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.247670.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g011940.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150383e-69AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593434.20.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A072V3D30.0A0A072V3D3_MEDTR; AP2/B3 transcription factor family protein
STRINGAES636850.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-156HSI2-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]