PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g011940.1
Common NameMTR_2g011940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 889aa    MW: 97873.1 Da    PI: 7.7063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g011940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-18344443198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e+
  Medtr2g011940.1 344 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEG 435
                      99**************************555566778***************9989999999***9.********************766.666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  Medtr2g011940.1 436 RLVMGFRK 443
                      67777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-30340446IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-20341444IPR015300DNA-binding pseudobarrel domain
CDDcd100178.30E-22342443No hitNo description
PROSITE profilePS5086311.096344445IPR003340B3 DNA binding domain
SMARTSM010191.4E-20344444IPR003340B3 DNA binding domain
PfamPF023621.5E-15344443IPR003340B3 DNA binding domain
PROSITE profilePS5105013.424571621IPR011124Zinc finger, CW-type
PfamPF074961.1E-10576618IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MASSSVPSSS SSSISSSTLK RCFNSDCKDF RSTKKGWRLR TGDLAQLCDR CGSAFEEGRF  60
CDIFHANTSG WRNCETCRKR IHCGCIVSSS TFVLLDPGGI ECFTCARKNV ILPSNLPWPQ  120
SLSLTNRLSE RYRDMSGKSW SQLAGSGPVP WKQAPSLFNS ASSSDQPPAV HSLVDLSNNF  180
DKIYGNERLP PSSLEKKNED LAGISANWNV KLGSSEMVLM NGMRNEDKSG PCLNMCQQPH  240
TLKEDSSSQP FGLSVPYSSP NERNGQIGVT GIHPQQTPPH LGKQFGGTMH LPLDSSGEAQ  300
VRNGRPRADA RGRSQLLPRY WPRCTELELQ QISVDSNSVI TPLFQKTLSA SDAGRIGRLV  360
LPKKCAETYF PPISQPEGLP LKILDAKGKE WIFQFRFWPN NNSRMYVLEG VTPCIQSMQL  420
QAGDTVTFSR LEPEGRLVMG FRKATNPLPS DQDNEANKTG NGFSAPEVEL ADPSSWSNVD  480
KSGYIAKEAL GSKSLISRKR KNNILGSKSK RLKIENEDII ELKITWQEAQ GLLRPPPNHV  540
PSIVVIEGFE FEEYEDAPVL GKPSIFTSDN MGERIQWARC EDCLKWRKLP ACALLPAKWT  600
CSDNSWDPER SSCSAAQELT TEQLENLLPP CNSVSKKMKA TKQDPDHAEA LEGLDTLANL  660
AILGEGEALP SSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC LTVKRRFRTL  720
MLRREKKQSE KEAETTRKKQ QQQNFQQLPS SEILLDDDSL HNSNTGDSSP TMNKEGNDGS  780
DDDPHRIKSS VSPFKGQIDL NIQPEREEEL SPGSDSGGVM KLLHDAAAEM YLKQQQTLLN  840
SGTGDSSGSQ SQQVGDVVRE VKLSNGVIHG SSSHNADKEH AQSLSMNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-613224462126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11721TLKRC
2498512KRKNNILGSKSKRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.247670.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g011940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593434.20.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A396J3B30.0A0A396J3B3_MEDTR; Putative transcription factor & chromatin remodeling CW-Zn-B3/VAL family
STRINGAES636850.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]