PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g010790.1
Common NameMTR_2g010790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GeBP
Protein Properties Length: 421aa    MW: 45748.5 Da    PI: 4.9508
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g010790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57374.42.1e-23202286195
           DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      k+fqr++seeDe+v+L+Gl df aktgk+p++++ af++fvkk ++++++ +ql  K+r LKkKf+            +f+k+hd+ +f+l k 
  Medtr2g010790.1 202 KNFQRVFSEEDELVILKGLGDFVAKTGKDPMKETAAFHSFVKKLLKADANAEQLKRKVRGLKKKFESSD---------NFTKPHDKRAFDLFK- 285
                      58***************************************************************8654.........479999999999875. PP

           DUF573  95 i 95 
                      +
  Medtr2g010790.1 286 V 286
                      4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.8E-20204287IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAPKPKKRLA LVDDPPTASS SDEEQPPSTQ KPADKVVNEQ DEDSSSEEEE GDEEDGSSSE  60
DEEEEDNQTQ QTPSKDSKPA SKNPPPSTPI SNPKPAESES GSESGSESGT ESDSEPEHKS  120
EPTPPPNPKV KPLASKPMKT QTQAQAQSTP VPIKSGTKRV AESSTGNDSK RSKKKTTTAG  180
GGSDDENEVE EDAKLTGEDS KKNFQRVFSE EDELVILKGL GDFVAKTGKD PMKETAAFHS  240
FVKKLLKADA NAEQLKRKVR GLKKKFESSD NFTKPHDKRA FDLFKVWSKN ASKEAEENGK  300
SNEKIAKSAK KEAPVKNGGS AKKELAIVTK NVSGKVESGV GKSFILSELV KFDEAAGIAV  360
LDKDAAESGL ELMRESDRVE LEERWKKLQA AEMDVFLNRA EVVREQTRLA MQELKKKSST  420
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.10810.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g010790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1690750.0AC169075.2 Medicago truncatula chromosome 2 BAC clone mth2-124m13, complete sequence.
GenBankAC1875430.0AC187543.3 Medicago truncatula strain A17 clone mth2-74p6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593377.10.0probable transcription factor At4g00390
TrEMBLG7IK180.0G7IK18_MEDTR; DNA-binding storekeeper protein-related transcriptional regulator, putative
STRINGAES636280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.17e-21DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]