PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g010450.1
Common NameMTR_2g010450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 354aa    MW: 40034.6 Da    PI: 7.8337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g010450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.2e-12178223555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h   Er+RR+++ ++f  L  l+P++     kK++Ka++L +A++Y+k+++
  Medtr2g010450.1 178 HIVTERKRREKLSQRFIALSALVPNL-----KKMDKASVLGEAIRYLKQME 223
                      8889**********************.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.561173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-17177235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.75E-11178227No hitNo description
SuperFamilySSF474598.37E-16178237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-12179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSSHMEISSI RGLPEMGIME DPNFLHHFNN HLSSIDTNNL TASAFGDALQ KHILSNNPNF  60
NNKTCMETSP TGNERPAKQL RNNSWNYNNS PPTSDTQYDN CCSNNLLSFA DLNYTNQLGL  120
LKPKSEMVCP KIDNTSTLAN MLITQGNLFG NQNHVFKAVQ EAKDIENRPN KLSQAHDHIV  180
TERKRREKLS QRFIALSALV PNLKKMDKAS VLGEAIRYLK QMEEKVSVLE EEQKRKKTVE  240
SVVIVKKSQL SMNEAEDRAD TNNSTYDETL PEIEARFCER SVLIRLHCLK SQGVIEKIMS  300
EIEKLHLKVI NSSSLTFGNF TLDITIIAQM DVGFCMTVKD LVRKIRSAYS SFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13177233864Transcription factor MYC2
5gnj_B3e-13177233864Transcription factor MYC2
5gnj_E3e-13177233864Transcription factor MYC2
5gnj_F3e-13177233864Transcription factor MYC2
5gnj_G3e-13177233864Transcription factor MYC2
5gnj_I3e-13177233864Transcription factor MYC2
5gnj_M3e-13177233864Transcription factor MYC2
5gnj_N3e-13177233864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
2182187RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.7559e-76root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g010450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1308000.0AC130800.24 Medicago truncatula clone mth2-36b7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593344.20.0transcription factor bHLH25
SwissprotQ9T0725e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLG7IFB70.0G7IFB7_MEDTR; Symbiotic ammonium transporter
STRINGAES635950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-57bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]