PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g007810.1
Common NameMTR_2g007810, MtrDRAFT_AC157375g6v1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 93aa    MW: 10193.9 Da    PI: 4.8551
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g007810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer33.87.6e-1119471645
      ZF-HD_dimer 16 slGghavDGCgEfmpsegeegtaaalkCaA 45
                     s GghavDGC+Ef+++ geegt +a+ CaA
  Medtr2g007810.1 19 SFGGHAVDGCCEFIAA-GEEGTLEAVICAA 47
                     68*************9.999*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152314.274958IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-61953IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.1E-101947IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MEKEEKKKSI GGEKRGRESF GGHAVDGCCE FIAAGEEGTL EAVICAAWRI QNSRIQILIP  60
PSCFCVVVLH ESDSLMLVME PTSEFFLAMM RL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g007810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1573751e-155AC157375.2 Medicago truncatula chromosome 2 clone mth2-55b12, complete sequence.
GenBankAC1892761e-155AC189276.2 Medicago truncatula chromosome 2 BAC clone mth2-79L2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2Q4822e-60A2Q482_MEDTR; ZF-HD protein dimerization region protein
STRINGAES633513e-61(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-10homeobox protein 28
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]