PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g492790.1
Common NameMTR_1g492790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 502aa    MW: 57848.2 Da    PI: 6.3745
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g492790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.35.1e-29114199187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l L+e+r+++++++r++++k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Medtr1g492790.1 114 RWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 199
                      8*************************************7778*****************************8..55667*******85 PP
2trihelix42.12.3e-13414481167
         trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                      rWt+ e+  Li++r+  e+++r+ g l+ + W+e++++m   gf+r+  +Ck+ w+++++  +++ + 
  Medtr1g492790.1 414 RWTEMEISNLIQLRSGFEHQVREkGYLDDGVWDEIGERMVYMGFNRNGAECKKIWDDISMSLRRTVDC 481
                      8*********************8478***********************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172111174IPR001005SANT/Myb domain
PfamPF138371.3E-19113200No hitNo description
PROSITE profilePS500906.888113172IPR017877Myb-like domain
CDDcd122033.98E-22113179No hitNo description
SMARTSM007175.3411474IPR001005SANT/Myb domain
PfamPF138371.0E-7413489No hitNo description
PROSITE profilePS500906.4414472IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSDLYGLPED LRRLITSSRN TTHLPAEPPC LYGGAATFPP PNYSYDPMMV GDVFYPRSNF  60
THHHYDYSST VNPTTTTIAA ASNSDHATAS TAFCVGLETS DKGWLGNFDS CNNRWPRQET  120
LSLLEIRSRL DSKFRENNQK APLWNEISRI MAEEFGYQRS GKKCKEKFEN LYKYYKKTKE  180
GKASRQDGKH YRFFRQLEAI CGEPNTNSHA STLDKITPNA SFVATQTPTF TINQENTNGV  240
DHNLIHNHKY SQSLSFSNSS EFETSSSENN DEDLSTIAHT MKSSKEKGQS GHRRARKSWR  300
GKVEEIVDSH MKNIIETQDA WMERMLSVVE QREQEMASKE EERKRKESMR FDQEIHELWA  360
KEKAWVEARD SALLEVVRKH IGIQLEAPNK SKSQEANDTT NYEYPFESVD NIHRWTEMEI  420
SNLIQLRSGF EHQVREKGYL DDGVWDEIGE RMVYMGFNRN GAECKKIWDD ISMSLRRTVD  480
CGVKNTRPWC LGLKVTDDDD L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g492790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941221e-106BT094122.1 Soybean clone JCVI-FLGm-18O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469384.10.0trihelix transcription factor PTL
TrEMBLA0A072VNQ70.0A0A072VNQ7_MEDTR; Putative transcription factor MYB family
STRINGXP_004496179.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-75Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]