PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g116940.1 | ||||||||
Common Name | MTR_1g116940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 27341.9 Da PI: 7.978 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 62 | 87 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ Medtr1g116940.1 62 KTRLCNKFNTAEGCKFGDKCHFAHGE 87 8***********************96 PP | |||||||
2 | zf-CCCH | 33.5 | 7.3e-11 | 225 | 249 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +G+rC+FaHg Medtr1g116940.1 225 FKTKLCENFTK-GSCTFGERCHFAHG 249 69*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 7.883 | 1 | 21 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.4 | 8 | 18 | No hit | No description |
SuperFamily | SSF90229 | 2.49E-8 | 58 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-14 | 58 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.263 | 61 | 88 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-7 | 62 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0074 | 62 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.19E-12 | 130 | 204 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 5.2E-8 | 131 | 201 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 2.1E-12 | 131 | 202 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 11.804 | 132 | 196 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.62E-10 | 134 | 197 | No hit | No description |
Pfam | PF00013 | 2.2E-8 | 134 | 197 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-16 | 222 | 256 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-9 | 224 | 254 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.699 | 224 | 251 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4E-7 | 224 | 250 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 225 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVYITSGCPF GEGCHFLHYV PGGFKAVYQM INVGSSPAIP PIGRNPNVPQ SFPDGSSPPV 60 AKTRLCNKFN TAEGCKFGDK CHFAHGEWEL GRPTVPAYED TRAMGQMQSS SVGGRIEPPP 120 PAHGAAAGFG VSATATVSIN ATLAGAIIGK NDVNSKQICH ITGAKLSIRE HDSDPNLRNI 180 ELEGSFDQIK QASAMVHDLI LNVSSVSGPP GKNITSQTSA PANNFKTKLC ENFTKGSCTF 240 GERCHFAHGT DELRKPGM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g116940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630946.1 | 0.0 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 2e-94 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | G7ICA7 | 0.0 | G7ICA7_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
STRING | AES63110 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 3e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g116940.1 |
Entrez Gene | 11446765 |
Publications ? help Back to Top | |||
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