PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g115315.2

Common Name

MTR_1g115315

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

WOX

Protein Properties

Length: 263aa MW: 29884.8 Da PI: 6.7769

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g115315.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	70.2	2.5e-22	83	143	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+e+++e+A++l +++e++V++WFqNrRa+ k+ Medtr1g115315.2 83 RQRWTPTPVQLQILERIFDQgNGTPSKEKIKEIATELsqhgQISETNVYNWFQNRRARSKR 143 89***************99************************************97 PP
2	Wus_type_Homeobox	101.7	5.3e-33	82	144	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtPtp Q++iLe+++++G tP+ke+i++i++eL+++G+i+++NV++WFQNr+aR+++k Medtr1g115315.2 82 SRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRK 144 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-19	78	147	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.758	79	144	IPR001356	Homeobox domain
SMART	SM00389	3.7E-16	81	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-20	82	146	IPR009057	Homeodomain-like
CDD	cd00086	9.91E-15	83	145	No hit	No description
Pfam	PF00046	4.7E-20	83	143	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MVNMMEWQKQ QVQNGNVEAM YVKVMTDEQL ETLRKQIAVY ATICEQLVEM HKTLSAQQDL 60 AGVRLGNLYC DSLMTAGHKI TSRQRWTPTP VQLQILERIF DQGNGTPSKE KIKEIATELS 120 QHGQISETNV YNWFQNRRAR SKRKMQNGGT SNTESEVETE VDSKDKKTKP EEFHSQQSAA 180 LGDENLCFQN QEKCSELQYL NHGSNKTYSV FPSDGGIRST RNLSGVSLYD EVLSNSSMLH 240 LVLSSFICLF IGFIFRMILY CS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.4297	0.0	leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g115315.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146874	0.0	BT146874.1 Medicago truncatula clone JCVI-FLMt-15B6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013470433.1	1e-177	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	3e-78	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A072W2K5	0.0	A0A072W2K5_MEDTR; Wuschel-related homeobox protein
STRING	XP_004497297.1	1e-141	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	8e-74	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Medtr1g115315.2
Entrez Gene	25485702

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]