PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g114730.1
Common NameMTR_1g114730
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 348aa    MW: 40146.9 Da    PI: 9.8563
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g114730.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.65.1e-161151343
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     i+ +  r+ tf kR+ g++KK +E S+LCd++v+v++++++
  Medtr1g114730.1 11 IQKEKSRKSTFQKRKDGLMKKVNEFSILCDVDVCVVLYAPN 51
                     77788999******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.03161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-20293IPR002100Transcription factor, MADS-box
CDDcd002661.37E-20278No hitNo description
PRINTSPR004043.0E-11323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRGRISMEL IQKEKSRKST FQKRKDGLMK KVNEFSILCD VDVCVVLYAP NFVGRGFAEP  60
ETWPKDKRAV ERILQKYYNT TSDRRPKIYD VQEYFKERIR KLEFEITKVR KEKLKMMYPT  120
WNESFNSLGA EQLILFASKL EAKLDACNQK KHMLKEDLKG KTIAHESHKV DKLISTPSLT  180
PNPSYYFNLM QNSMSQAQTY PPMMNISDKN PLGFWPLQSG QSSQPSSLIS NIQSSHRVES  240
EEGRYVQSYP YKHIDVNGAN WSNQVNANVT YNGGYQDRCF GLPKINMERK DGAEKDYNGN  300
AMTMQSYPIT MHTLPFQNLS NLPHGFQLNG FNAKDILQAH MFMNGRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g114730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470391.10.0MADS-box transcription factor 20
TrEMBLA0A072VR190.0A0A072VR19_MEDTR; MADS-box transcription factor family protein
STRINGAES629960.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.18e-27M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]