PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g114380.1 | ||||||||
Common Name | MTR_1g114380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TCP | ||||||||
Protein Properties | Length: 258aa MW: 27430.6 Da PI: 10.1468 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.1 | 5.5e-37 | 27 | 185 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg... 88 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + +s++s + Medtr1g114380.1 27 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSslsvS-----LRGSSNSLPsps 115 789*************************************************************9999977743221.....222222222333 PP TCP 89 .....................................................................k 89 + Medtr1g114380.1 116 stsldhkpllsptpfilgkrirtdddsssssakddalsvgslstpaalwalparpdfgqiwsfaaaaagA 185 4456666666666666666665555555555555555555555556666666666666666555555551 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.892 | 33 | 87 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.1E-34 | 33 | 196 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSNPDGTTTT TTTTNGSIID PNRQQLAVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSSL SVSLRGSSNS LPSPSSTSLD 120 HKPLLSPTPF ILGKRIRTDD DSSSSSAKDD ALSVGSLSTP AALWALPARP DFGQIWSFAA 180 AAAGAPPPEM MVQSLSQQQH QVQANFFAHH HQQQQHQQAM GEASAARVGN YLPGHLNLLA 240 SLSGGHGNSG RRDDEHH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.10177 | 0.0 | flower| root| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g114380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151824 | 0.0 | AC151824.13 Medicago truncatula clone mth2-45n18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592726.1 | 0.0 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-96 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | G7IE92 | 0.0 | G7IE92_MEDTR; Putative transcription factor TCP family | ||||
STRING | AES62977 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 5e-62 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g114380.1 |
Entrez Gene | 11423879 |
Publications ? help Back to Top | |||
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