PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g112760.1 | ||||||||
Common Name | MTR_1g112760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26476.2 Da PI: 8.6191 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.5e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++++++G g+W+++++ g+ R++k+c++rw +yl Medtr1g112760.1 15 KGLWSPEEDDKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 4e-15 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ Medtr1g112760.1 68 RGMFSKQEEDLIINLHEALGNR-WAQIASQLP-GRTDNEIKNFWNS 111 788*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.894 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.24E-10 | 18 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.783 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.60E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSRRHSCSLK QKLRKGLWSP EEDDKLFNYI TMFGVGCWSS VPKLAGLQRC GKSCRLRWIN 60 YLRPDLKRGM FSKQEEDLII NLHEALGNRW AQIASQLPGR TDNEIKNFWN SSLKKKLMKQ 120 GIDPATHKPL INNESLLVKE EKEKPSMIMP LSQPQPQRTL MLESSHEYSE ALLMNKPTFD 180 LDPLQLQFEL NQFGTNSSYF FSSDNISNNS FSNMINENTA GGLISWEGEN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 13 | 117 | 5 | 108 | B-MYB |
1h8a_C | 2e-28 | 9 | 117 | 21 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15761 | 1e-110 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g112760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052924 | 1e-108 | BT052924.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-C-4 unknown mRNA. | |||
GenBank | BT134215 | 1e-108 | BT134215.1 Medicago truncatula clone JCVI-FLMt-12F11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013470336.1 | 1e-170 | transcription factor MYB86 | ||||
Swissprot | Q8LPH6 | 3e-78 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A072VQY3 | 1e-169 | A0A072VQY3_MEDTR; Myb transcription factor | ||||
STRING | AES71450 | 1e-127 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1083 | 33 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 7e-80 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g112760.1 |
Entrez Gene | 25485627 |
Publications ? help Back to Top | |||
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