PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g112650.1
Common NameMTR_1g112650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 317aa    MW: 35249.6 Da    PI: 4.682
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g112650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.31.7e-2242126179
         trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                      rWt+qe+l+L+ ++++ e+rl+ g+      + +++W  vs++++++g++r+p+qCk++w nl  +ykkike+e++ ++e++s +
  Medtr1g112650.1  42 RWTRQEILVLVHGKNDAESRLKPGRngslfgSFEKKWTLVSSYCEKHGVNRTPIQCKKRWGNLTADYKKIKEWESQVSDETESFW 126
                      8*********************88666677799*******************************************987777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.84135105IPR017877Myb-like domain
PfamPF138371.9E-1241128No hitNo description
Gene3DG3DSA:1.10.10.605.4E-542104IPR009057Homeodomain-like
SuperFamilySSF466893.04E-543110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDLDEPSLPS NPNINDGIGN ETPPSSAVND GEDVKPAGRL QRWTRQEILV LVHGKNDAES  60
RLKPGRNGSL FGSFEKKWTL VSSYCEKHGV NRTPIQCKKR WGNLTADYKK IKEWESQVSD  120
ETESFWLMNV ELRRERKLPG CFDIEVYNIL DSAVAANAVP VAVAAPVSEV VGDEEVYIYD  180
SNRKVSGEDE LFSDLEKDDN VLSPVPISVS VSEKQFIPLL SGLQGEGNAI NEKQPGERKR  240
KRGVATEGNI EEEEEESVQS ELIKVLEKNG KMLCEQLEAR NKSLQLDRQQ QNQTATKMVA  300
VLDKLANALG RIADKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g112650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470325.10.0trihelix transcription factor ASR3
TrEMBLA0A072VSJ70.0A0A072VSJ7_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGAES778411e-138(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-66Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]