PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g110970.1
Common NameMTR_085s0037, MTR_1g110970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 345aa    MW: 38622.9 Da    PI: 4.352
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g110970.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-1895142152
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                      s+y+GVr ++ +g+W+AeIr p++n    rf+lg+++tae+A +a++  r++
  Medtr1g110970.1  95 SKYRGVRLRP-WGKWAAEIRNPYTN---VRFWLGTYDTAEDASQACESKRLQ 142
                      89********.**********9874...*****************9999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.87E-2095135No hitNo description
SuperFamilySSF541712.48E-1495142IPR016177DNA-binding domain
PfamPF008473.4E-1195142IPR001471AP2/ERF domain
PROSITE profilePS5103217.76796157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-1996143IPR001471AP2/ERF domain
SMARTSM003802.4E-1496150IPR001471AP2/ERF domain
PRINTSPR003671.6E-997108IPR001471AP2/ERF domain
PRINTSPR003671.6E-9119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MRGSRKSRQV VFNDPEATDS SEDESQHART LTKISFVEVT LPPNVSAVYL AYQNSFFEKS  60
KTVTRRKACL STQRQTKKKV VPTISPPKTK RQSSSKYRGV RLRPWGKWAA EIRNPYTNVR  120
FWLGTYDTAE DASQACESKR LQFKLDHEAD IAKICFDKSS STTPLVATLN KNSYVDDDVA  180
NALVSEKCST AKEYESLFSQ ISPSSVLELD TLASNPIEKV DVPSNNEVVV VVDEASEMLT  240
CQLQELEIPN QSVCNFPEPV AVENPIGIDP NLGLGLDFAR FNIDDFGPDF EEFGDIGDFE  300
DIQVHGFDDN EPSELPDFDF GDIGDDDEFA GWIKEPFQHN ICYL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.250422e-58root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g110970.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630924.10.0ethylene-responsive transcription factor ERF118
TrEMBLG7ZZD40.0G7ZZD4_MEDTR; Ethylene-responsive transcription factor ERF118-like protein
STRINGAES845720.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-19ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]