PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g110970.1 | ||||||||
Common Name | MTR_085s0037, MTR_1g110970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 345aa MW: 38622.9 Da PI: 4.352 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 7.1e-18 | 95 | 142 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 s+y+GVr ++ +g+W+AeIr p++n rf+lg+++tae+A +a++ r++ Medtr1g110970.1 95 SKYRGVRLRP-WGKWAAEIRNPYTN---VRFWLGTYDTAEDASQACESKRLQ 142 89********.**********9874...*****************9999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.87E-20 | 95 | 135 | No hit | No description |
SuperFamily | SSF54171 | 2.48E-14 | 95 | 142 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-11 | 95 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.767 | 96 | 157 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-19 | 96 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-14 | 96 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MRGSRKSRQV VFNDPEATDS SEDESQHART LTKISFVEVT LPPNVSAVYL AYQNSFFEKS 60 KTVTRRKACL STQRQTKKKV VPTISPPKTK RQSSSKYRGV RLRPWGKWAA EIRNPYTNVR 120 FWLGTYDTAE DASQACESKR LQFKLDHEAD IAKICFDKSS STTPLVATLN KNSYVDDDVA 180 NALVSEKCST AKEYESLFSQ ISPSSVLELD TLASNPIEKV DVPSNNEVVV VVDEASEMLT 240 CQLQELEIPN QSVCNFPEPV AVENPIGIDP NLGLGLDFAR FNIDDFGPDF EEFGDIGDFE 300 DIQVHGFDDN EPSELPDFDF GDIGDDDEFA GWIKEPFQHN ICYL* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.25042 | 2e-58 | root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g110970.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630924.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | G7ZZD4 | 0.0 | G7ZZD4_MEDTR; Ethylene-responsive transcription factor ERF118-like protein | ||||
STRING | AES84572 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G25890.2 | 1e-19 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g110970.1 |
Entrez Gene | 25485503 |
Publications ? help Back to Top | |||
---|---|---|---|
|