PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g109320.1 | ||||||||
Common Name | MTR_1g109320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 358aa MW: 39343.9 Da PI: 7.7151 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.5 | 2.9e-15 | 274 | 299 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg Medtr1g109320.1 274 FKTELCNKWQETGTCPYGDHCQFAHG 299 79***********************8 PP | |||||||
2 | zf-CCCH | 18.3 | 4.1e-06 | 312 | 336 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H Medtr1g109320.1 312 YKTEVCRMVLA-GvVCPYGHRCHFRH 336 9**********.66**********88 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-19 | 269 | 306 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-11 | 270 | 305 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.004 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-12 | 274 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-11 | 307 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-8 | 307 | 341 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 311 | 338 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.803 | 311 | 339 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 358 aa Download sequence Send to blast |
MHNKDVCSPS SKSGYGIGVN NAGHMQSNAG VFASLYSALS NDLPSSLAGN SSNGGGFSLY 60 PYSDLGTEYD SCVIQKHQDM VNRHSMFLSR LLESSKEVEA LQQENGQLRA VNKELQKNLN 120 LLVQASLENR FNGGGSSVQT QSTPFDVLQG FRGLNLGDGK ENCADWNSNN INNNNKELQE 180 ASESDESPTS VIENNGVETE RFSLPKSISV RSNGYLKLAP PPAVVTNNNA CRTKGATRSR 240 ASSTQSDTVQ KVFVRGGQKE EEPLEMVVYN QGMFKTELCN KWQETGTCPY GDHCQFAHGI 300 GELRPVIRHP RYKTEVCRMV LAGVVCPYGH RCHFRHALTE QEKAMSQPKP RSMKLER* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-22 | 274 | 340 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.14467 | 1e-178 | glandular trichome| root |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g109320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-109 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013470126.1 | 0.0 | zinc finger CCCH domain-containing protein 15 | ||||
Swissprot | Q9C9F5 | 5e-84 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A072VQ63 | 0.0 | A0A072VQ63_MEDTR; Putative transcription factor C3H family | ||||
STRING | XP_004497020.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-84 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g109320.1 |
Entrez Gene | 25485458 |
Publications ? help Back to Top | |||
---|---|---|---|
|