PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g107015.3
Common NameMTR_1g107015
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-PHD
Protein Properties Length: 852aa    MW: 93454.2 Da    PI: 4.7741
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g107015.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.91.7e-136847291156
                      HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++L + F++n+yp ++++e LA++lgLt +qV  WF N R + +
  Medtr1g107015.3 684 VVQRLHKSFKENQYPERTAKESLAQELGLTFQQVDKWFGNSRWRFR 729
                      5799**************************************9988 PP
2PHD37.36e-13337392151
                      SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ C+     ++++++lCdg C++ +H+ Cl+++l +e++p g   wlC+ C++k
  Medtr1g107015.3 337 FCAKCQTkvLGTNNDIILCDGaCDRGYHQLCLDPPLLTEDIPPGdeGWLCPGCDCK 392
                      6999**988888********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.87E-13327395IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.7E-12334391IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.638335392IPR019787Zinc finger, PHD-finger
SMARTSM002491.2E-9337390IPR001965Zinc finger, PHD-type
PfamPF006283.7E-10337392IPR019787Zinc finger, PHD-finger
CDDcd155041.67E-27337389No hitNo description
PROSITE patternPS013590338389IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007114.123671731IPR001356Homeobox domain
SMARTSM003892.5E-12673735IPR001356Homeobox domain
SuperFamilySSF466899.41E-13679739IPR009057Homeodomain-like
PfamPF000464.8E-11684729IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-13685735IPR009057Homeodomain-like
CDDcd000864.03E-12685732No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MISSTGKSTS PNDFTTEKIG TEQRDMSEKT TQVGSECLDK EQSVLGTVVT DSVIDEKSNN  60
ISVNMTENSV IQLPGEMRDA VTTLVEEQPQ PVPVQVKSNS VNELLDPPSG DVAKNISSQN  120
EPGETSDAVT GLVEDQTQSV PAQVKTESSG DAAKNNSSDC SERKSKNLGQ MRVKHGAIKN  180
SKLSKKYVLR SLGSSDRALR SRTKDDKPKD PEPINTVTDV NNDEIKTKER RKKKKKKTRK  240
EGINDQFSKI RAQLRYYLNR ISYEQNLIDA YSGEGWKGSS MEKLKPEKEI QRAKSEILRR  300
KLKIRDLFQN LDSLCAEGRL PESLFDSEGE IDSEDIFCAK CQTKVLGTNN DIILCDGACD  360
RGYHQLCLDP PLLTEDIPPG DEGWLCPGCD CKDDCIELVN DLLGTSLSLT DSWERVFPEA  420
ATAAGSILDH NLGLPSDDSD DDDYNPDGPE DVKVEGGKSS SDESEYASAS EKFEDPGHED  480
QYMGLPSEDS EDDDFDPDAP NPGAKDIEES SSSDFTSDSE DLAATIKDNM STGQDDVTSA  540
PLDDVKNFKG SSKQNRKKPS ITDELSSLAE PDLGEEDLTP VSGKRNVERL DYQKLYEETY  600
HSDTSDDEDW ADTTTPSRKK KLTAKITPGS PNGNASNNSR RTAKRNTHQH KVENTNNSPT  660
KTLEGCTESG KKRGSSYCKL GEAVVQRLHK SFKENQYPER TAKESLAQEL GLTFQQVDKW  720
FGNSRWRFRH SSCKEASPGS NASQQANDSG AKNKGDNASQ QASESGAENK GDRGNASQQA  780
TDSGGENKRE TEHQLVSQET SGEKSKTPSS KKRKRLSEPQ TSEAGLVRNG STFDCLPVAG  840
TSNKMKKKKG K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228234ERRKKKK
2229235RRKKKKK
3230236RKKKKKK
4231239KKKKKKTRK
5639645RRTAKRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.255250.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g107015.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470010.10.0homeobox protein HAT3.1 isoform X1
RefseqXP_024626899.10.0homeobox protein HAT3.1 isoform X1
TrEMBLA0A072VRI30.0A0A072VRI3_MEDTR; Homeobox KN domain protein
STRINGXP_004496910.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.17e-88Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]