PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g106480.1
Common NameMTR_1g106480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 158aa    MW: 17809.6 Da    PI: 9.3828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g106480.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-10861251155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rRR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Medtr1g106480.1  86 RRRERINERLRILQTLVPNG-----TKVDISTMLEEAVQYVKFLQ 125
                      8*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.40875124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-782130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1186132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1286136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-1186129No hitNo description
PfamPF000106.8E-886125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSHNEEGLTW HDSSLEQNGG KPSILSPKEH EAPKLCRKSK AGSGPATDAQ SIYLCKSKSP  60
LKDISLVRIW IQVNYAESQY VIMILRRRER INERLRILQT LVPNGTKVDI STMLEEAVQY  120
VKFLQLQIKL LSMWMYAPIA YNGMNIGLDL SFSSPTN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.68425e-94root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g106480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592481.11e-58transcription factor bHLH84
SwissprotQ7XHI96e-38BH084_ARATH; Transcription factor bHLH84
TrEMBLG7IET21e-113G7IET2_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES627331e-113(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.32e-32bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]