PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g106420.1 | ||||||||
Common Name | MTR_1g106420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21638.4 Da PI: 8.0034 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.2 | 7.2e-30 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++dC+l+ ++ p++q++++ +v k+FG+++++++l+ +++++r+++++sl+yeA r+ +Pv+Gavg+++++++q +q Medtr1g106420.1 2 SCNGCRVLRKGCSEDCMLRDCLtwiqnPQAQANATVFVTKFFGRATLMSFLSPVHPNQRSCLFQSLMYEAVGRTINPVNGAVGLLWTGKWQFCQ 95 6********************************************************************************************* PP DUF260 90 lkaelal 96 l +e +l Medtr1g106420.1 96 LGVEQVL 102 9988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.285 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-25 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEDCMLR DCLTWIQNPQ AQANATVFVT KFFGRATLMS FLSPVHPNQR 60 SCLFQSLMYE AVGRTINPVN GAVGLLWTGK WQFCQLGVEQ VLRGNGGALT ALPDQLLGVD 120 HDSSSIHHQY HQQQSGLMSY SRVVKNQAEK QRAGTHESEE SESSTLGSRT RTEDCSYVYA 180 NSQTQRNQLL TLFL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13192 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g106420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137275 | 0.0 | BT137275.1 Medicago truncatula clone JCVI-FLMt-4B8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592478.1 | 1e-145 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 1e-52 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | G7IE59 | 1e-143 | G7IE59_MEDTR; LOB domain protein | ||||
STRING | AES62729 | 1e-144 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-54 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g106420.1 |
Entrez Gene | 11415147 |
Publications ? help Back to Top | |||
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