PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g105905.1 | ||||||||
Common Name | MTR_1g105905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 221aa MW: 24972.5 Da PI: 10.593 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67 | 1.8e-21 | 2 | 47 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskRr g++KKA+EL++ C+a+va+++fs+ k++ + Medtr1g105905.1 2 SNESNLQVTFSKRRSGLFKKASELCTICGADVALVVFSPGEKVFSF 47 79***************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-21 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.212 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-23 | 2 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-23 | 2 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-9 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-9 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSNESNLQVT FSKRRSGLFK KASELCTICG ADVALVVFSP GEKVFSFGQP NVDTLIDRYL 60 SQVPPKNNGT MQFIKAHRRS NVRGLNSQLT QINQLLHNEK KRAEELRHLR KATETQFWWA 120 GPVNGMSRDQ LEFFKKALEA LSKLVAYHAD RLVIQSAPTQ IFPFFVGNGS SFNMPLDHQS 180 NPPQTQMFPT QFFQNPMLQP HLFGFNNVRG GGGYGPFRFF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g105905.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145331 | 0.0 | AC145331.19 Medicago truncatula clone mth2-8o7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469940.1 | 1e-163 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A072VRD4 | 1e-162 | A0A072VRD4_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AET02583 | 1e-135 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-55 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g105905.1 |
Entrez Gene | 25485296 |
Publications ? help Back to Top | |||
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