PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g105425.1 | ||||||||
Common Name | MTR_1g105425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HB-other | ||||||||
Protein Properties | Length: 153aa MW: 17939.4 Da PI: 10.2541 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.6 | 6.8e-11 | 108 | 151 | 2 | 45 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 r+ ++t++ ++e+e++Fe+++ p+ ++r++L+ +lgLt +q+k Medtr1g105425.1 108 RSNFRHTQKHIQEMESFFEQCPLPNGKQRKQLSCELGLTPAQIK 151 44456788889********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-10 | 94 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-11 | 94 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.345 | 104 | 152 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.92E-7 | 107 | 151 | No hit | No description |
Pfam | PF00046 | 1.6E-8 | 108 | 151 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MYAKHQMWSL SIEIQTLVHP VMRVKKKIQA ILIFITRNFK HNNFETSAKH QNVVDHPQPV 60 QKQQFRDMPI NITSSIGDLE RCNQNQNSRN EALSSLQDQD PNHHQQRRSN FRHTQKHIQE 120 MESFFEQCPL PNGKQRKQLS CELGLTPAQI KF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g105425.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496853.1 | 8e-19 | homeobox-leucine zipper protein MERISTEM L1-like | ||||
TrEMBL | A0A072VQJ2 | 1e-109 | A0A072VQJ2_MEDTR; Homeobox domain protein | ||||
STRING | XP_004496853.1 | 3e-18 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 6e-19 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g105425.1 |
Entrez Gene | 25485235 |
Publications ? help Back to Top | |||
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