PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g105400.1
Common NameMTR_1g105400
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 365aa    MW: 40704.5 Da    PI: 6.0122
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g105400.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17113159151
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                      s+y+GVr ++ +grW+AeIr p +n    r++lg+++t+eeA +a++  r+
  Medtr1g105400.1 113 SKYRGVRLRP-WGRWAAEIRNPLTN---VRIWLGTYDTEEEASQAYESERL 159
                      89********.**********8653...******************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-16113160IPR016177DNA-binding domain
PfamPF008474.6E-11113159IPR001471AP2/ERF domain
CDDcd000183.39E-22113154No hitNo description
SMARTSM003802.0E-16114168IPR001471AP2/ERF domain
PROSITE profilePS5103218.887114177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-20114161IPR001471AP2/ERF domain
PRINTSPR003671.8E-9115126IPR001471AP2/ERF domain
PRINTSPR003671.8E-9137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MRGSRKSRAR PRPNLLKQSK LITRKLQVVY NDPEATDTSE DESQHARTTS KRSFVEVTLP  60
PHVSATSLAS HKSFSKKSKI VSRKKACLST QRQIKKKVIP TITSPKTRRQ PSSKYRGVRL  120
RPWGRWAAEI RNPLTNVRIW LGTYDTEEEA SQAYESERLQ IALDSQATKP KRCFNKESSA  180
TSPVVTLNKN SSANDDDANA LVSEKCSTTK DSKNLFLQTP PSSMLELDTL TSNLVEKVDV  240
PSNNVVVVVN KASAMMSCQL QELEIPNPSV FNLHEPVVTE NPIGTDPNLG LGFDFDQFNI  300
DDFGKDFQEF GGCGDLGDFE DIQIHGFDDN GPSELPDFDF GDIGDDDEFA GWIDAPFQHN  360
IYFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.173062e-33leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g105400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592475.20.0ethylene-responsive transcription factor ERF119
TrEMBLG7IE560.0G7IE56_MEDTR; Ethylene-responsive transcription factor ERF118-like protein
STRINGAES627260.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.25e-23ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]