PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g103230.1 | ||||||||
Common Name | MTR_1g103230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | CPP | ||||||||
Protein Properties | Length: 625aa MW: 70071.6 Da PI: 7.1492 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 39.3 | 1.3e-12 | 437 | 474 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+ C Cfaag++C C+C+dC Nk Medtr1g103230.1 437 CKHCKCKKSKCLKLNCGCFAAGVYCIGPCSCQDCLNKA 474 89**********************************96 PP | |||||||
2 | TCR | 30.2 | 8.7e-10 | 523 | 559 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 + +C+ +ks+C +k CeCf+ g+ Cs +CkC++CkN Medtr1g103230.1 523 RIQCKSRKSSCTNKRCECFKGGVGCSPSCKCQGCKNI 559 578*********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.1E-12 | 435 | 476 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 27.724 | 436 | 561 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.7E-9 | 438 | 473 | IPR005172 | CRC domain |
SMART | SM01114 | 6.1E-8 | 521 | 562 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 6.2E-7 | 525 | 558 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MAALDQNNTI VSNSLEDDSF FDYLDTLSPL NTKKYVGVGA TETLNSLGMD NPLFTSLDVT 60 FNNDSIFLTR NNLLYTSNPE VSPEEAPTDS THAWIDTSQL HDPEISSDDA KYLLELLGKQ 120 EPDGTDVQDE SITDAVEGGT YNRDGPDCDY NNLISTTQSV TLLPQCTSNS NYKMKTVDPL 180 VFGSKYEIED NPSEPIAVAT DRNQAQDNLA NVALMDRNQI KRGDGELARI RRCIQRSCQG 240 YESEMTSMQR NNSDERNAIN KNPSDSQKCV LQGNGFYLNA LPALNHYEGI ENEKMPSQRK 300 PESPSCTYSL NISVRQGHQL SQVPAPMETH LRLSENEDVT KSSVHIPGED FCQSTPKRTS 360 EVQFKDIKNK KLDQNMKRTM KVHRKDPIDL VSSGSEHVKE EERADFCQSI RKRKRKPNTK 420 VQLCRNKSDL TRKGGACKHC KCKKSKCLKL NCGCFAAGVY CIGPCSCQDC LNKAINEDKV 480 LQAHRMIEYR NPPVFVPKVI TNSDSSPQIV DDSDKAPASN RRRIQCKSRK SSCTNKRCEC 540 FKGGVGCSPS CKCQGCKNIY DRKDSEAETK SELEETEASQ ISSRKDVLNH WQPEPRDRGI 600 KCYWINMKLK LNYLLLAVVA GTRH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 410 | 415 | RKRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g103230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630895.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A072VQY2 | 0.0 | A0A072VQY2_MEDTR; Tesmin/TSO1-like CXC domain protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20561 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 5e-37 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g103230.1 |
Entrez Gene | 25485166 |
Publications ? help Back to Top | |||
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