PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g101810.1
Common NameMTR_1g101810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 368aa    MW: 38729.4 Da    PI: 5.0563
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g101810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.47.7e-3688159273
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 
                      a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+qa+p+i+e+tgt++ +a ++
  Medtr1g101810.1  88 AAAKRSSKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAV 159
                      6789************************************************************77777443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-2893163IPR005333Transcription factor, TCP
PROSITE profilePS5136926.894148IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MWGSPPLLGF CLKDSNTVNV SKTLFLCKTK MEVNPNGGDV LCEENKTDST EVSPSETTEP  60
AAALMKEELT ETENNSLIPV PVQTMTVAAA KRSSKDRHTK VEGRGRRIRI PATCAARIFQ  120
LTRELGHKSD GETIRWLLEQ AEPSIIEATG TGTVPAIAVS VGGTLKIPTS SPARPDGEDA  180
PVKRRRRASN SEFVDLNDQV SMCSGLAPIA QTAYGAAATS SGGGSGENGG GLVPLWPVVS  240
NGVGSNTTGP FFMFPNSTLM NQPQFWAIPA APFFNVQTRP ISDFVSAMQM PQEPSNAATA  300
YANSNASSTL APSLSSATST SCSATTSSSS ATNTQMLRDF SLDIFDKKEL QFMGCSSANL  360
ESSPSSN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g101810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558030.0AC155803.26 Medicago truncatula clone mth2-103j6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625426.10.0transcription factor TCP19
RefseqXP_024625433.10.0transcription factor TCP19
RefseqXP_024625442.10.0transcription factor TCP19
SwissprotQ9LT891e-75TCP19_ARATH; Transcription factor TCP19
TrEMBLG7IC210.0G7IC21_MEDTR; TCP family transcription factor
STRINGAES625900.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-70TCP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]