PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g101600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22929.6 Da PI: 5.2277 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 39 | 89 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+e+r+p +k++r++lg+f t+e+Aa+a++ a+ +l+g Medtr1g101600.1 39 PVYRGVRKRD-SGKWVCEVREP---NKKTRIWLGTFPTPEMAARAHDVAAIALRG 89 68*****999.7******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.4E-14 | 39 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.55 | 40 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-21 | 40 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 40 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-31 | 40 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.13E-31 | 41 | 99 | No hit | No description |
PRINTS | PR00367 | 7.4E-9 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-9 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNQFSESHDP CSSSSERFLA ETMPKKRAGR KKFRETRHPV YRGVRKRDSG KWVCEVREPN 60 KKTRIWLGTF PTPEMAARAH DVAAIALRGR SACLNFADSA WKLPVPATSE ARDIQKAAAE 120 AAEAFRPESV FENSEERKDS EPSSTVAVSE TVMEQREEEE DTVPEYLRNM VLMSPAHYWG 180 SDCGVADVEF DETEVSLWSY SF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-14 | 38 | 96 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.6959 | 0.0 | root| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g101600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC202516 | 0.0 | AC202516.13 Medicago truncatula clone mth2-67c18, complete sequence. | |||
GenBank | AC212012 | 0.0 | AC212012.3 Medicago truncatula clone mth2-65h3, complete sequence. | |||
GenBank | HQ110079 | 0.0 | HQ110079.1 Medicago truncatula CRT/DRE binding factor 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592322.2 | 1e-148 | dehydration-responsive element-binding protein 1A | ||||
Swissprot | Q9FJ93 | 6e-64 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | E1AXT3 | 1e-147 | E1AXT3_MEDTR; CRT/DRE binding factor 4 | ||||
STRING | AES62573 | 1e-147 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 2e-63 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g101600.1 |