PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g101550.1
Common NameMTR_1g101550
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 233aa    MW: 25332.9 Da    PI: 6.3508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g101550.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.3e-1657104355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G r ++ +g+Wv+eIr+p++   +kr++lg++ tae+Aa+a++ a+++l+g
  Medtr1g101550.1  57 YRGTR-CR-SGKWVSEIREPRK---TKRIWLGTYPTAEMAAAAYDVAALALKG 104
                      66666.55.6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.36349112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2556113IPR001471AP2/ERF domain
SMARTSM003801.0E-2756118IPR001471AP2/ERF domain
CDDcd000181.46E-1656114No hitNo description
SuperFamilySSF541711.9E-1857114IPR016177DNA-binding domain
PfamPF008471.6E-961104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLSSYLQQQH KHFTSFVMDG TNNNTSSVPP PIQPPDASSA PTTPSSSPAT TGVAGRYRGT  60
RCRSGKWVSE IREPRKTKRI WLGTYPTAEM AAAAYDVAAL ALKGPDTTLN FPNSILSYPI  120
PASLSSTDIR AAAEAAAQTR IMRPAQQDQQ QQNPSAFSFE GSSSSSGILQ QQQGHHHEYI  180
DEDELLNMPS LLDDMARGMQ VSPPRMSSFS NCSSDDSPRN SDGRDNLWSY NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12551141374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.121130.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g101550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2025160.0AC202516.13 Medicago truncatula clone mth2-67c18, complete sequence.
GenBankAC2120120.0AC212012.3 Medicago truncatula clone mth2-65h3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625387.11e-147ethylene-responsive transcription factor ERF027
SwissprotQ9FJ903e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLG7IBZ91e-171G7IBZ9_MEDTR; Ethylene-responsive transcription factor ERF026
STRINGAES625681e-158(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-34ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]