PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g098460.1
Common NameMTR_1g098460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 363aa    MW: 39221.9 Da    PI: 7.2336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g098460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-20138187255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Medtr1g098460.1 138 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 187
                      7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.3E-33138196IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-22138196IPR016177DNA-binding domain
PfamPF008471.2E-13138187IPR001471AP2/ERF domain
PROSITE profilePS5103225.646138195IPR001471AP2/ERF domain
SMARTSM003801.1E-38138201IPR001471AP2/ERF domain
PRINTSPR003671.2E-11139150IPR001471AP2/ERF domain
CDDcd000185.08E-14146197No hitNo description
PRINTSPR003671.2E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSCPMVSAPT QHGLGQAQNE WVQVQQGSGY FPMMSGFVPV SSSSNSPRMY SSSAALLGSS  60
SWVGHKRVRE DGLLKSDDSV GGSSQQDMRN IADFRLPSSQ GNSSSVAEAT TSSTSNTTQS  120
SEAASTTNEE ETGERRRRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFET AEAAARAYDE  180
AALRFRGNRA KLNFPENVPA SATRPTFPVN TSTSSVSPAT HYSPAPPQIQ PQQQQFPQFQ  240
TSSDMLRDYY QYSQLLKGSG DFQGLEQWFY ESQMAAIHSS SSMLSPSPSL SLSSSSSPTA  300
FSPSSQLSSV SLPLFPGQQM EFFRPPEDNS RGGGYTGGSH FPPSTWSDTG GYHPPPPPPS  360
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23137198163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138ERRRRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.31840.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g098460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1509780.0AC150978.15 Medicago truncatula clone mth2-66m17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592075.10.0ethylene-responsive transcription factor ERF110
TrEMBLG7IBX20.0G7IBX2_MEDTR; AP2 domain class transcription factor
STRINGAES623260.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-19ethylene response factor 110
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]