PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g097190.1
Common NameMTR_1g097190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 141aa    MW: 15760.9 Da    PI: 7.5066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g097190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-152365349
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                     y GVr ++ +gr++AeIr p++   + r++lg+f+taeeAa a++  
  Medtr1g097190.1 23 YLGVRKRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDIS 65
                     77******.**********865...5******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510429.198164IPR003350CUT domain
SuperFamilySSF541712.09E-182281IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-262280IPR001471AP2/ERF domain
SMARTSM003806.7E-282286IPR001471AP2/ERF domain
PROSITE profilePS5103220.2572280IPR001471AP2/ERF domain
CDDcd000184.77E-272379No hitNo description
PRINTSPR003675.7E-92334IPR001471AP2/ERF domain
PfamPF008473.9E-82463IPR001471AP2/ERF domain
PRINTSPR003675.7E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MENIPPLIFK NPIRRTSRRS TMYLGVRKRP WGRYAAEIRN PYTKERHWLG TFDTAEEAAV  60
AYDISSIKIC GIDNARTNFH YPFVSHPQQP PRLLLPAPPP PTPELDASIP EMNVAFDGDD  120
ESMVIASILQ SFSNSGSCSL *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g097190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469561.11e-101ethylene-responsive transcription factor LEP
SwissprotQ3E7032e-26ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A072VNJ71e-100A0A072VNJ7_MEDTR; DNA-binding domain protein
STRINGXP_007143615.11e-71(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145131317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-27ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]