PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g095850.1 | ||||||||
Common Name | MTR_1g095850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 25125 Da PI: 6.9132 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.2 | 2.5e-42 | 72 | 171 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++l Medtr1g095850.1 72 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQL 165 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e Medtr1g095850.1 166 AKAQAE 171 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.992 | 71 | 172 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-42 | 72 | 169 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEHKMKTTTS PPHLPIPIHV PIHTMLSNST PSSSSSPPLQ SPTPFPSPPS QYSPPSAAPQ 60 PPSPPPPIIV SPCAACKILR RRCVEKCVLA PYFPPTDPLK FTIAHRVFGA SNIIKFLQEL 120 PEPQRADAVS SMVYEANARI RDPVYGCAGA ICQLQKQVSE LQTQLAKAQA ELVNMHCQQA 180 NLVALICMEM STQSSPDHDM IINQPQPHVD MSCFLEDNNF GSAWEPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 63 | 179 | 2 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 63 | 179 | 2 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g095850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144484 | 0.0 | AC144484.5 Medicago truncatula clone mth2-30o16, complete sequence. | |||
GenBank | AC152818 | 0.0 | AC152818.17 Medicago truncatula clone mth2-85g12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591977.1 | 1e-167 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 4e-73 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | G7I9N1 | 1e-166 | G7I9N1_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AES62228 | 1e-166 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-71 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g095850.1 |
Entrez Gene | 11418419 |
Publications ? help Back to Top | |||
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