PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g095570.2
Common NameMTR_1g095570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 1224aa    MW: 133147 Da    PI: 6.6786
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g095570.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09367408346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE el+++ ++ +G++ +++Ia+ +  ++t  +c+++++k
  Medtr1g095570.2 367 PWTSEEKELFLEKFAAFGKD-FRKIASFLD-HKTTADCIEFYYK 408
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding30.67.9e-10553595347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT +E   +++av  +G++ +++I+r++g ++  ++ck ++ k 
  Medtr1g095570.2 553 EWTDDETAAFLQAVSSFGKD-FEKISRCVG-TKAQEHCKRFFSKT 595
                      6*****************99.*********.*********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.24E-14351412IPR009057Homeodomain-like
PROSITE profilePS5129317.326363414IPR017884SANT domain
SMARTSM007172.8E-9364412IPR001005SANT/Myb domain
PfamPF002494.1E-7366408IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-6367408IPR009057Homeodomain-like
PROSITE profilePS5129311.792549600IPR017884SANT domain
SMARTSM007179.7E-7550598IPR001005SANT/Myb domain
SuperFamilySSF466894.11E-9553599IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-4553595IPR009057Homeodomain-like
CDDcd001673.73E-5553592No hitNo description
PfamPF002493.3E-7553594IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1224 aa     Download sequence    Send to blast
MTESEIDLLE NELKSLKSES VDRSECPVAS GSQQADSSSK FYEERVEVSQ KVIRPVPLKI  60
ISSDEPNTVK MPQSTNLCSI HENDKEEDID SPGSATSKFV EPLPVNAVSS SYTRGYDNLS  120
RDMNAVQSTM MKCFVRCNRK NTSVSACNNV NTPTEVKDSL GDVTFGANLC SSYGDTYKSI  180
IASNKESANR AHKLFTKLVP KECKKHGNMG VSNDSFSHTS ILQKFAEKKQ FERFKERVIA  240
LKFKALHHLW KEDMRLLSIR KCRPKSHKKN ELNVRTTCSS NMKNRSSIRS RFTFPAGNHL  300
SLVPTTEIIN FTSKLLSESQ AQLQRNTLKM PALILDEKEK MVTKFISSNG LVEDPLAIEK  360
ERSMINPWTS EEKELFLEKF AAFGKDFRKI ASFLDHKTTA DCIEFYYKNH KSECFEKLKR  420
KDIGKLGKSY AAKTNLMASG NKRMRGRRYL LGYGNVKASR GEDSIIERSN SFDTLGDERE  480
TAAAADVLAG ICGSFSSEAM SSCITSSIDP VDGNKETKFL KANPLFKQPL TPDISQNADD  540
ETCSDESCGE ATEWTDDETA AFLQAVSSFG KDFEKISRCV GTKAQEHCKR FFSKTRKCLG  600
LNLANPVPGI NGSPLNDDAN GGESDTDDAC VVEAGSVVDA DKSGNKTDED LPSDALNTFH  660
DESNPLEATS LSAKLNESRE ISGTEVCLEN VDVASVACAI NVESKLGSDV SGVGLCTTDK  720
SGSVNGVGLG GTVRESISAS EIIKPRECGS VALDRTVSEG SSGGLCLGSE VERQRVSAPH  780
CVVDKDVEHV ADAGVVVELK NCVLESSTAA NVSFSPVVNS CSGLSFGSEN KHVSFGKPHT  840
SALSMSMSDL QATANSLLLK AAAAQCEKTV SQDRLSSTCD IQGGRDMRCH SSGSNGDHQL  900
PLSGSHVETV SVLQGYSMQV PIKKEVDGDV NCSSSAAEFP LLPQKVKQTD GHFKPSFHSS  960
NSEKTSRNGD VKLFGKILTN PSSTQNPNLT AKRSEENGSH HPKLNNKSSN LNFTGHQNSD  1020
ENLNFLKFGL ENVPVMSYGY WEGNAIQSRQ SGLSSLPDSS FLLAKYPAAF SNYPTSSSNL  1080
EQQPPLQAFA KNSQRHLTGA STFTARDVNG SNAMLDYQMF RGRDGPQVQP FMVDVQHRQD  1140
LFSEMQRRHS FEAISSLQQQ GRGMMGMNSV GRPGILVGGS CSGVSDPVAA IKMHYSNSEK  1200
YGGQNGSVVR DDESWGGKGD LGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C7e-18325416494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D7e-18325416494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.79940.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g095570.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1260150.0AC126015.41 Medicago truncatula clone mth2-13l2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591951.20.0uncharacterized protein LOC11405402
TrEMBLA0A072VZP30.0A0A072VZP3_MEDTR; Myb DNA-binding domain protein
STRINGAES856970.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.15e-90MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]