PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g095570.1
Common NameMTR_136s0031, MTR_1g095570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 1656aa    MW: 180212 Da    PI: 6.8682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g095570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-09799840346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE el+++ ++ +G++ +++Ia+ +  ++t  +c+++++k
  Medtr1g095570.1 799 PWTSEEKELFLEKFAAFGKD-FRKIASFLD-HKTTADCIEFYYK 840
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding30.11.1e-099851027347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47  
                        WT +E   +++av  +G++ +++I+r++g ++  ++ck ++ k 
  Medtr1g095570.1  985 EWTDDETAAFLQAVSSFGKD-FEKISRCVG-TKAQEHCKRFFSKT 1027
                       6*****************99.*********.*********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-14783844IPR009057Homeodomain-like
PROSITE profilePS5129317.326795846IPR017884SANT domain
SMARTSM007172.8E-9796844IPR001005SANT/Myb domain
PfamPF002495.8E-7798840IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-6799840IPR009057Homeodomain-like
PROSITE profilePS5129311.7929811032IPR017884SANT domain
SMARTSM007179.7E-79821030IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-49851027IPR009057Homeodomain-like
CDDcd001675.25E-59851024No hitNo description
SuperFamilySSF466895.83E-99851031IPR009057Homeodomain-like
PfamPF002494.6E-79851026IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1656 aa     Download sequence    Send to blast
MPPEPLPWDR KDFFKERKHD RSEAVGSVAR WRDSSHHRDF NRWGSAEFRS RPPGHGKQGG  60
WHMFSEEPGH GYGVSRSGDK MLEEDGRPLV SRGDGKYGRS SRDNRGGPFG QRDWRGHSWE  120
ASNGSPNLSR RPQDMNNEQR SVDDSPTYSS HPHSDFVNTW EQHNLKDQHA KTGGVNGLGT  180
GPRCDRENSL SSIDWKPLKW TRSGSLSSRG SGFSHSSSSR SMAGTDSYEG KPNLKHKNVT  240
AVESNSGEAT ACVTSSMPSE DATSRKKPRL NWGEGLAKYE KKKVDVPDPG SNKDGSVSSA  300
GNMEPCSSIS PNLVDKSPKV TGFSDCASPA TPSSVACSSS PGVDDKLLGK VGNADNDVSN  360
LTDSPAPGFQ NHLQKFYLNL DKLDVDSLNS LGSSIVELVQ SDDPSSDDSG LVRSNAINKL  420
LIWKADISKV LEMTESEIDL LENELKSLKS ESVDRSECPV ASGSQQADSS SKFYEERVEV  480
SQKVIRPVPL KIISSDEPNT VKMPQSTNLC SIHENDKEED IDSPGSATSK FVEPLPVNAV  540
SSSYTRGYDN LSRDMNAVQS TMMKCFVRCN RKNTSVSACN NVNTPTEVKD SLGDVTFGAN  600
LCSSYGDTYK SIIASNKESA NRAHKLFTKL VPKECKKHGN MGVSNDSFSH TSILQKFAEK  660
KQFERFKERV IALKFKALHH LWKEDMRLLS IRKCRPKSHK KNELNVRTTC SSNMKNRSSI  720
RSRFTFPAGN HLSLVPTTEI INFTSKLLSE SQAQLQRNTL KMPALILDEK EKMVTKFISS  780
NGLVEDPLAI EKERSMINPW TSEEKELFLE KFAAFGKDFR KIASFLDHKT TADCIEFYYK  840
NHKSECFEKL KRKDIGKLGK SYAAKTNLMA SGNKRMRGRR YLLGYGNVKA SRGEDSIIER  900
SNSFDTLGDE RETAAAADVL AGICGSFSSE AMSSCITSSI DPVDGNKETK FLKANPLFKQ  960
PLTPDISQNA DDETCSDESC GEATEWTDDE TAAFLQAVSS FGKDFEKISR CVGTKAQEHC  1020
KRFFSKTRKC LGLNLANPVP GINGSPLNDD ANGGESDTDD ACVVEAGSVV DADKSGNKTD  1080
EDLPSDALNT FHDESNPLEA TSLSAKLNES REISGTEVCL ENVDVASVAC AINVESKLGS  1140
DVSGVGLCTT DKSGSVNGVG LGGTVRESIS ASEIIKPREC GSVALDRTVS EGSSGGLCLG  1200
SEVERQRVSA PHCVVDKDVE HVADAGVVVE LKNCVLESST AANVSFSPVV NSCSGLSFGS  1260
ENKHVSFGKP HTSALSMSMS DLQATANSLL LKAAAAQCEK TVSQDRLSST CDIQGGRDMR  1320
CHSSGSNGDH QLPLSGSHVE TVSVLQGYSM QVPIKKEVDG DVNCSSSAAE FPLLPQKVKQ  1380
TDGHFKPSFH SSNSEKTSRN GDVKLFGKIL TNPSSTQNPN LTAKRSEENG SHHPKLNNKS  1440
SNLNFTGHQN SDENLNFLKF GLENVPVMSY GYWEGNAIQS RQSGLSSLPD SSFLLAKYPA  1500
AFSNYPTSSS NLEQQPPLQA FAKNSQRHLT GASTFTARDV NGSNAMLDYQ MFRGRDGPQV  1560
QPFMVDVQHR QDLFSEMQRR HSFEAISSLQ QQGRGMMGMN SVGRPGILVG GSCSGVSDPV  1620
AAIKMHYSNS EKYGGQNGSV VRDDESWGGK GDLGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C1e-17757848494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D1e-17757848494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.79940.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g095570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1260150.0AC126015.41 Medicago truncatula clone mth2-13l2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591951.20.0uncharacterized protein LOC11405402
TrEMBLG7I9K50.0G7I9K5_MEDTR; Myb DNA-binding domain protein
STRINGAES856970.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-149MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]