PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g093750.1
Common NameMTR_1g093750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 339aa    MW: 37707.2 Da    PI: 6.6563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g093750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14160206354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Medtr1g093750.1 160 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 206
                      79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-12160206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-14161213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-15161215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-5170209No hitNo description
Gene3DG3DSA:3.30.70.2602.2E-4249314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIQEDQGQCS SQTINNFETY QQEQFLLQQQ MMRQQNSDHH IFGGGRSMFP TAGGDHNQVS  60
PILQQTWSMQ QLHHHHHPFN PHDPFVIPQQ QASPYASLFN RRVPSLQFAY DHHAGSEHLR  120
IISDTLQHGS GSGPFGGFQG EVGKMSAQEI MEAKALAASK SHSEAERRRR ERINNHLAKL  180
RSLLPSTTKT DKASLLAEVI QHVKELKRQT SLIAETSPVP TECDELTVDA AADDEDYGSN  240
GNKFIIKASL CCDDRSDLLP ELIKTLKALR LRTLKADITT LGGRVKNVLF ITGEEDDHEY  300
CISSIQEALK AVMEKSVGDE SASGSVKRQR TNIISISN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g093750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465700.0AC146570.7 Medicago truncatula clone mth2-103j7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591832.10.0transcription factor bHLH30
SwissprotQ9S7Y19e-93BH030_ARATH; Transcription factor bHLH30
TrEMBLG7I4X00.0G7I4X0_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES620830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]