PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g093670.1 | ||||||||
Common Name | MTR_1g093670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 39407.2 Da PI: 4.8991 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.7 | 1.3e-24 | 23 | 147 | 1 | 110 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksg 81 lp+G++F+P+d+e++++ L+k eg++ +++ ++ i+++d i++++P++Lp v+++ +fF+++ k+y+tg+rk+r + Medtr1g093670.1 23 LPRGVKFDPSDQEIIWHLLAKVGEGSSkpHPFIDAfITTLDvnggICYTHPQHLP-GVSQDGIASHFFHRTVKAYSTGSRKRRRicggkeFSYV 115 799************8888777666667744434336665544569*********.555666789******************73444332345 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy....k 110 +W++tgk+k++l +g ++g+kk++v+y + Medtr1g093670.1 116 RWHKTGKTKPILL-NGVQKGCKKIMVLYmfpeN 147 6************.999***********44432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-26 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 17.202 | 23 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-8 | 24 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MVLNCSCVEI LHFVEVTQEW PGLPRGVKFD PSDQEIIWHL LAKVGEGSSK PHPFIDAFIT 60 TLDVNGGICY THPQHLPGVS QDGIASHFFH RTVKAYSTGS RKRRRICGGK EFSYVRWHKT 120 GKTKPILLNG VQKGCKKIMV LYMFPENGGK EEDEKEGGHV ISIVFYQQQQ AKLGEKDDQD 180 VRETAEATIA NVALITPNFV TTEPPLITPN FVDQAQETHH IPQILENLPW LEEWLLNSED 240 DCEEMDNIDL PLNLLDSQQL PETFSWFEDF IQSQSPKRHR ENDEQKNQPS LSAYAHLGPE 300 QLKKDKEECQ NLDHTGNVQL DSESSDIRLS QQEFSSQELY RLLGW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 104 | RKRRR |
2 | 101 | 105 | KRRRI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g093670.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591828.2 | 1e-146 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 6e-84 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | G7I497 | 0.0 | G7I497_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES62078 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-66 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g093670.1 |
Entrez Gene | 11408501 |