PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g093080.3 | ||||||||
Common Name | MTR_1g093080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28971.5 Da PI: 7.4332 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.3 | 1.1e-10 | 211 | 235 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W++eLH+rF++a++qLGG++ Medtr1g093080.3 211 KQRRCWSQELHKRFLKALQQLGGAD 235 79*********************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-8 | 209 | 236 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0055062 | Biological Process | phosphate ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MQRFKMGFSD YIQALEQERR KIQVFPKELP LSLELVTQAI EACRQQLSGT TTEYNLNGQS 60 ECSEQTTSTD GPVLEEFIPI KKRASSYSQE VFDDVEDYDQ HFHHKQQKLS LDNKKKSDWL 120 RSVQLWNSDP SSEEDVTKKA VPVLELKRNG CGGGAFHPFH KEDRVNNTTS ELLSKGQPSS 180 TGVAAVSSNA ATVTSNNVEN RKRDEKEEKR KQRRCWSQEL HKRFLKALQQ LGGADCEYLN 240 IYIKVLIIMY SCC* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.2498 | 0.0 | glandular trichome| root| stem |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00218 | DAP | Transfer from AT1G68670 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g093080.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC140027 | 0.0 | AC140027.11 Medicago truncatula clone mth2-5m21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591795.2 | 1e-177 | transcription factor HHO2 | ||||
TrEMBL | A0A072VN79 | 0.0 | A0A072VN79_MEDTR; Myb-like transcription factor family protein | ||||
STRING | AES62046 | 1e-116 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25550.1 | 3e-42 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g093080.3 |
Entrez Gene | 11422364 |
Publications ? help Back to Top | |||
---|---|---|---|
|