PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g093080.2
Common NameMTR_1g093080
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 284aa    MW: 32183.1 Da    PI: 6.8675
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g093080.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.75.5e-28211261151
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      k+r++W++eLH+rF++a++qLGG++ AtPk+i+e+m+v+gLt+++vkSHLQ
  Medtr1g093080.2 211 KQRRCWSQELHKRFLKALQQLGGADCATPKQIREVMNVDGLTNDEVKSHLQ 261
                      79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.448208268IPR017930Myb domain
SuperFamilySSF466891.88E-14209262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-23209261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-23211262IPR006447Myb domain, plants
PfamPF002492.6E-6213261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQRFKMGFSD YIQALEQERR KIQVFPKELP LSLELVTQAI EACRQQLSGT TTEYNLNGQS  60
ECSEQTTSTD GPVLEEFIPI KKRASSYSQE VFDDVEDYDQ HFHHKQQKLS LDNKKKSDWL  120
RSVQLWNSDP SSEEDVTKKA VPVLELKRNG CGGGAFHPFH KEDRVNNTTS ELLSKGQPSS  180
TGVAAVSSNA ATVTSNNVEN RKRDEKEEKR KQRRCWSQEL HKRFLKALQQ LGGADCATPK  240
QIREVMNVDG LTNDEVKSHL QVPNSFVVNF NLSICFDFVI SII*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.24980.0glandular trichome| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g093080.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400271e-172AC140027.11 Medicago truncatula clone mth2-5m21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591795.20.0transcription factor HHO2
SwissprotQ9FPE82e-64HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A072VPX70.0A0A072VPX7_MEDTR; Myb-like transcription factor family protein
STRINGAES620461e-135(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.14e-59G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]