PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g093080.1 | ||||||||
Common Name | MTR_1g093080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 379aa MW: 42166.7 Da PI: 7.9606 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.3e-32 | 211 | 266 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG++ AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Medtr1g093080.1 211 KQRRCWSQELHKRFLKALQQLGGADCATPKQIREVMNVDGLTNDEVKSHLQKYRLH 266 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.221 | 208 | 268 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 209 | 269 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-18 | 209 | 269 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.4E-27 | 211 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.2E-8 | 213 | 264 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0055062 | Biological Process | phosphate ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MQRFKMGFSD YIQALEQERR KIQVFPKELP LSLELVTQAI EACRQQLSGT TTEYNLNGQS 60 ECSEQTTSTD GPVLEEFIPI KKRASSYSQE VFDDVEDYDQ HFHHKQQKLS LDNKKKSDWL 120 RSVQLWNSDP SSEEDVTKKA VPVLELKRNG CGGGAFHPFH KEDRVNNTTS ELLSKGQPSS 180 TGVAAVSSNA ATVTSNNVEN RKRDEKEEKR KQRRCWSQEL HKRFLKALQQ LGGADCATPK 240 QIREVMNVDG LTNDEVKSHL QKYRLHTRRP SSTNNESANS QTAAPFVLVG NIFVQQQEYG 300 GVASSTTTGE MTKVVAPSGI YAPVATHPQV ATIKKPEFKK FEHSISEERG NNSEGAVHSN 360 SPTSSSSTHT TTNASTGY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2498 | 0.0 | glandular trichome| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00218 | DAP | Transfer from AT1G68670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g093080.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC140027 | 0.0 | AC140027.11 Medicago truncatula clone mth2-5m21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591795.2 | 0.0 | transcription factor HHO2 | ||||
Swissprot | Q8VZS3 | 9e-79 | HHO2_ARATH; Transcription factor HHO2 | ||||
TrEMBL | G7I465 | 0.0 | G7I465_MEDTR; Myb-like transcription factor family protein | ||||
STRING | AES62046 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3918 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68670.1 | 1e-72 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g093080.1 |
Entrez Gene | 11422364 |
Publications ? help Back to Top | |||
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