PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g090783.1
Common NameMTR_121s0009, MTR_1g090783
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17913.7 Da    PI: 9.8536
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g090783.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.6e-15947240
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                     +i+n   r+ t+ kR++gi+KK +ELS+LC++ ++ ii 
  Medtr1g090783.1  9 FISNGAARKATYNKRKKGIIKKVSELSTLCGVSACAIIS 47
                     89*********************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002668.67E-22181No hitNo description
PROSITE profilePS5006614.717146IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-18159IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-7222IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-21281IPR002100Transcription factor, MADS-box
PfamPF003195.8E-15949IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-72237IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MRQKVKLAFI SNGAARKATY NKRKKGIIKK VSELSTLCGV SACAIISNPF NSQIEVWPDR  60
EGAKKVIERY HNSSAKDETK NLNQEGLIMQ NIAKARDRLR KLENKKPEKK IDLLMHECMQ  120
NKNLVDNLTA EELKDLDEFI EKKLKEEDDK INAIET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g090783.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469299.11e-110MADS-box transcription factor PHERES 2
TrEMBLG8A1H71e-109G8A1H7_MEDTR; MADS-box transcription factor family protein
STRINGAES853151e-109(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.13e-34AGAMOUS-like 38
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]