PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g090710.1
Common NameMTR_1g090710
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18220.1 Da    PI: 9.8961
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g090710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.73.6e-141150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i ++s r+ ++ kR++g+lKK +EL +LCd+ ++ ii s+
  Medtr1g090710.1 11 IPDDSARKASYNKRKKGLLKKVSELTILCDVPACAIISSP 50
                     77899********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-22182IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.61149IPR002100Transcription factor, MADS-box
CDDcd002666.16E-22285No hitNo description
PRINTSPR004041.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MARRKVKLAL IPDDSARKAS YNKRKKGLLK KVSELTILCD VPACAIISSP FDSRTEVWPH  60
PEGANKIIER FQNLSVKDET RNVSHERFIM QTIAKARDKL RKLKYENHEQ EWDLFMLMKL  120
QANNNILDGL TTEEVKDLGK RAEKKLKEVD EKIDTLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139146KRAEKKLK
2139147KRAEKKLKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g090710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469276.11e-112agamous-like MADS-box protein AGL80
TrEMBLA0A072VMS91e-111A0A072VMS9_MEDTR; MADS-box transcription factor family protein
STRINGXP_004496299.12e-68(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-33AGAMOUS-like 38
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]