PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g090697.1
Common NameMTR_1g090697
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18124 Da    PI: 10.1214
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g090697.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.2e-151053245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     +i+++  r+ +f kR++g++KK  EL +LCd+ ++ ii s+ g 
  Medtr1g090697.1 10 FISDNAARKASFNKRKKGLIKKVTELTTLCDIPACAIISSPFGS 53
                     89**************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.526152IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-23182IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-20160IPR002100Transcription factor, MADS-box
CDDcd002666.71E-21285No hitNo description
PRINTSPR004043.8E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-141052IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MTRRKVKLAF ISDNAARKAS FNKRKKGLIK KVTELTTLCD IPACAIISSP FGSQMEVWPN  60
PEEAKKVIER YQSYSLIDEN KNVSHERYIM QMIAKGRDKL KKLKHDNREQ ELNLSMLRNL  120
KNNNLYEDLT AEELKDLAKR VDKKLKEVDG KIDTLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102DKLKKL
2138145KRVDKKLK
3138146KRVDKKLKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g090697.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469272.11e-111agamous-like MADS-box protein AGL80
TrEMBLA0A072VZ291e-110A0A072VZ29_MEDTR; MADS-box transcription factor family protein
STRINGXP_004496299.12e-74(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.29e-36M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]