PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g090290.1 | ||||||||
Common Name | MTR_070s0027, MTR_1g090290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 22641.1 Da PI: 6.7931 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 112 | 162 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ r++lg+f+ + +Aaka++ a+ +++g Medtr1g090290.1 112 HYRGVRRRP-WGKYAAEIRDPTRK--GSRVWLGTFDREIDAAKAYDCAAFRMRG 162 7********.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-31 | 111 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-11 | 112 | 162 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.10E-27 | 112 | 170 | No hit | No description |
SuperFamily | SSF54171 | 4.9E-22 | 112 | 172 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.604 | 112 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-34 | 112 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-13 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-13 | 152 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MTTSEETSSL TQLSQHLLED VSDSFFTNLS CVKLENTSSP EIDLDSYFSE HNSFLEILGF 60 EADTKLIDFT SSHNKVQNLH EESPLEETQK TTNLAESMVL ERKEQRSYGT RHYRGVRRRP 120 WGKYAAEIRD PTRKGSRVWL GTFDREIDAA KAYDCAAFRM RGQKAILNFP LEAGEANPKP 180 NNCGRKRRIH QRYDATS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-28 | 111 | 171 | 4 | 64 | ATERF1 |
3gcc_A | 4e-28 | 111 | 171 | 4 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.19242 | 0.0 | glandular trichome |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g090290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC166707 | 0.0 | AC166707.9 Medicago truncatula strain cultivar Jemalong A17 clone mte1-13o17, complete sequence. | |||
GenBank | AC233556 | 0.0 | AC233556.3 Medicago truncatula clone mth2-15m21, complete sequence. | |||
GenBank | BT137953 | 0.0 | BT137953.1 Medicago truncatula clone JCVI-FLMt-11K9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591657.1 | 1e-147 | ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | G7I303 | 1e-146 | G7I303_MEDTR; Ethylene response factor | ||||
STRING | AES61908 | 1e-147 | (Medicago truncatula) | ||||
STRING | AES84238 | 1e-147 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 4e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g090290.1 |
Entrez Gene | 11422933 |
Publications ? help Back to Top | |||
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