PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g090170.1
Common NameMTR_1g090170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 404aa    MW: 45168.9 Da    PI: 7.0045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g090170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.7e-19239288356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +kGVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  Medtr1g090170.1 239 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEDAAIAYDTAAYILRGE 288
                      8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.73E-30237297No hitNo description
Gene3DG3DSA:3.30.730.101.5E-30238296IPR001471AP2/ERF domain
PROSITE profilePS5103221.891238295IPR001471AP2/ERF domain
SMARTSM003803.5E-34238301IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-21238295IPR016177DNA-binding domain
PfamPF008473.3E-11239288IPR001471AP2/ERF domain
PRINTSPR003677.8E-10239250IPR001471AP2/ERF domain
PRINTSPR003677.8E-10261277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEIFTQKELP TCFQEIATTE SKYLEDTIIR RGSYSLTSSS TSSPQKLFWC TSNSTSMKQE  60
VPLTTLVNQI PAKFNDHHDD MKNMKAINQS ISEFNSISNP NVLASDIKHS FVPLNLLETL  120
PALTVAPMSD EPAVSLASST CATPKSPNLT LFLQEPSMLY SSTSNIKSSE IMSTSSNPTY  180
PMSQFGLTQH HQQSAYEFYD SNKMDRNMIT NLQSKSFNEN WLSATKTQPM KYGTRGKLFK  240
GVRQRHWGKW VAEIRLPRNR TRVWLGTFET AEDAAIAYDT AAYILRGECA QLNFPNLKHV  300
IQANSLNGTT ASLVEAKLQA ISQGVSSSHR KQGDSSARLN NRHIDEIKNG KDESIKELKV  360
VGDITERSKS TQNEICDVET VQLSRMPSLD MDIIWNELLV SDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-22235295263ATERF1
3gcc_A7e-22235295263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98500.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g090170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1667070.0AC166707.9 Medicago truncatula strain cultivar Jemalong A17 clone mte1-13o17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591645.20.0ethylene-responsive transcription factor ERF062
TrEMBLG7I2Z10.0G7I2Z1_MEDTR; AP2 domain class transcription factor
STRINGAES618960.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-54ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]