PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g088875.1 | ||||||||
Common Name | MTR_1g088875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 349aa MW: 37363.2 Da PI: 8.9393 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.8 | 1.4e-11 | 52 | 76 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+C yG+rC+F+H++ Medtr1g088875.1 52 VPNCAYYMRTGFCGYGGRCRFNHPR 76 689********************96 PP | |||||||
2 | zf-CCCH | 42.4 | 1.2e-13 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Medtr1g088875.1 96 GEPPCQYYLKTGTCKFGASCKFHHPK 121 579*********************96 PP | |||||||
3 | zf-CCCH | 38.7 | 1.6e-12 | 142 | 167 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Medtr1g088875.1 142 GESECSYYLKTGQCKFGVTCKFHHPQ 167 7899********************97 PP | |||||||
4 | zf-CCCH | 37.5 | 3.9e-12 | 299 | 325 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG Ck+G C+++H++ Medtr1g088875.1 299 PGEPVCQYYMRTGDCKFGLACRYHHPR 325 5789*********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.164 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-4 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-9 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 52 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-5 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-7 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-11 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 99 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.295 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-5 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-10 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 146 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 303 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MDLYGRSPTR NGSNPLNQHE WRSPAADLGE SMWHLSLGSG GGVESYPERH GVPNCAYYMR 60 TGFCGYGGRC RFNHPRDRAA VAAAVRATGD YPERLGEPPC QYYLKTGTCK FGASCKFHHP 120 KNGGGYLSQA PLNIYGYPLR PGESECSYYL KTGQCKFGVT CKFHHPQPAG TSLPASAPQF 180 YQQVQSPTVP PLPEQFGGAS ASVRVARPPV LPGSYVQGAY GPVLLSPGVV PFPGWSPYSA 240 PVSPVLSPGA QPAVGATSLY GVTQLSSSTS AFARPYTPLP SSPGPGGSTL QEKVFPERPG 300 EPVCQYYMRT GDCKFGLACR YHHPRDQVAA RPLLSPFGLP LRPEGSQF* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.16457 | 0.0 | root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g088875.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT052964 | 0.0 | BT052964.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-D-6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469207.1 | 0.0 | zinc finger CCCH domain-containing protein 32 isoform X3 | ||||
Swissprot | Q84W91 | 1e-161 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A072VYU5 | 0.0 | A0A072VYU5_MEDTR; Putative transcription factor C3H family | ||||
STRING | XP_004495983.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-154 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g088875.1 |
Entrez Gene | 25484766 |
Publications ? help Back to Top | |||
---|---|---|---|
|