PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g087920.1
Common NameMTR_1g087920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 306aa    MW: 34916.7 Da    PI: 6.3266
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g087920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1977125355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Medtr1g087920.1  77 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRG 125
                      9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-3276134IPR001471AP2/ERF domain
SMARTSM003804.1E-3876139IPR001471AP2/ERF domain
PROSITE profilePS5103223.80276133IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2276134IPR016177DNA-binding domain
CDDcd000189.45E-3377134No hitNo description
PfamPF008478.7E-1277125IPR001471AP2/ERF domain
PRINTSPR003677.9E-127788IPR001471AP2/ERF domain
PRINTSPR003677.9E-1299115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MCGGAIIADF IPRRDGRRLT ASELWPNSFG QQIDSSNFGF SHTAADQQPP STLKRSQPPK  60
VNERVEKPLK KQRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDKEA  120
RKIRGKKAKV NFPNEDDEYT IHATRRYNNN PPPIRPQKLP LYHQQHYQKN LNLEFGYDLN  180
QTDTIHAINT GSGGDENSLF GSGSVSEVGF SVMEFNGGSN QNEFGYFGGV VNEHEKEKEK  240
VVEQETHVVE QAEAELAKNE VQELSDELLA YEDYMKFYQI YYDGQSVMPP NNVQEHVVGD  300
LWSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2177133360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21771351574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.94720.0flower| pod| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g087920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1421930.0BT142193.1 Medicago truncatula clone JCVI-FLMt-4C3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591474.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLG7IEJ40.0G7IEJ4_MEDTR; Ethylene response factor
STRINGAES617250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-43ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]