PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g086250.2 | ||||||||
Common Name | MTR_1g086250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 812aa MW: 90713.1 Da PI: 5.5215 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 43.6 | 8e-14 | 2 | 31 | 49 | 78 |
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 fh l+efDe+krsCrrrLa+hn+rrrk+++ Medtr1g086250.2 2 FHILEEFDEGKRSCRRRLAGHNKRRRKTNQ 31 9**************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 14.409 | 1 | 29 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.16E-10 | 2 | 33 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.7E-7 | 2 | 28 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 2.8E-8 | 551 | 698 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.39E-9 | 565 | 697 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.66E-8 | 585 | 696 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 812 aa Download sequence Send to blast |
MFHILEEFDE GKRSCRRRLA GHNKRRRKTN QEAVPNGSPT NDDQTSSYLL ISLLKILSNM 60 HSDRSDQPTD QDLLTHLLRS LASQNDEQGS KNLSNLLREQ ENLLREGGSS RNSGMVSALF 120 SNGSQGSPTV ITQHQPVSMN QMQQEMVHTH DVRTSDHQLI SSIKPSISNS PPAYSETRDS 180 SGQTKMNNFD LNDIYVDSDD GTEDLERLPV STNLATSSVD YPWTQQDSHQ SSPAQTSGNS 240 DSASAQSPSS SSGEAQSRTD RIVFKLFGKE PNEFPLVLRA QILDWLSQSP TDIESYIRPG 300 CIVLTIYLRQ AEAVWEELCC DLTSSLIKLL DVSDDTFWKT GWVHIRVQHQ MAFIFNGQVV 360 IDTSLPFRSN NYSKIWTVSP IAVPASKRAQ FSVKGVNLMR PATRLMCALE GKYLVCEDAH 420 ESTDQYSEEL DELQCIQFSC SVPVSNGRGF IEIEDQGLSS SFFPFIVAEE DVCTEIRVLE 480 PLLESSETDP DIEGTGKIKA KSQAMDFIHE MGWLLHRSQL KYRMVNLNSG VDLFPLQRFT 540 WLMEFSMDHD WCAVVKKLLN LLLDETVNKG DHPTLYQALS EMGLLHRAVR RNSKQLVELL 600 LRYVPDNTSD ELGPEDKALV GGKNHSYLFR PDAVGPAGLT PLHIAAGKDG SEDVLDALTN 660 DPCMVGIEAW KNARDSTGST PEDYARLRGH YTYIHLVQKK INKTQGAAHV VVEIPSNMTE 720 SNKNPKQNES FTSLEIGKAE VRRSQGNCKL CDTKISCRTA VGRSMVYRPA MLSMVAIAAV 780 CVCVALLFKS SPEVLYMFRP FRWESLDFGT S* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.4233 | 0.0 | flower| leaf| pod| root| seed| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g086250.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591325.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9SMX9 | 0.0 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A072VP28 | 0.0 | A0A072VP28_MEDTR; Squamosa promoter-binding-like protein | ||||
STRING | AES61576 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g086250.2 |
Entrez Gene | 11412439 |
Publications ? help Back to Top | |||
---|---|---|---|
|