PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g085770.1
Common NameMTR_1g085770
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 308aa    MW: 35686.1 Da    PI: 7.9194
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g085770.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161761448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     W++eEde+l+ +v+++G+g+Wk +++  g+  ++++c+ rw++ l
  Medtr1g085770.1 17 WSKEEDEILKAYVEKHGTGNWKEVSKNTGLAHCGNSCRFRWYNTL 61
                     ******************************************975 PP
2Myb_DNA-binding45.22.1e-1467110145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g++++eE+e++ +++ ++G   W++ a +m+ gRt++++k++w+
  Medtr1g085770.1  67 KGPFSKEEEEKFFELFSKFGEFKWSKMALEMP-GRTDNDIKNFWN 110
                      79******************99**********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.818865IPR017930Myb domain
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
SuperFamilySSF466899.87E-2513109IPR009057Homeodomain-like
CDDcd001671.75E-111761No hitNo description
PfamPF139212.5E-151777No hitNo description
Gene3DG3DSA:1.10.10.602.1E-201767IPR009057Homeodomain-like
SMARTSM007173.4E-1466115IPR001005SANT/Myb domain
PROSITE profilePS5129416.61666117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2068115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MPSSSDTNKR LKKGTLWSKE EDEILKAYVE KHGTGNWKEV SKNTGLAHCG NSCRFRWYNT  60
LRPDLRKGPF SKEEEEKFFE LFSKFGEFKW SKMALEMPGR TDNDIKNFWN ARKRKHQRHC  120
LSPFPDNNME LVDGLNSSNG KRIRNSQENK FKIPEVIKFG NQILHTNLFD DSNMFFNNVG  180
STSTCNHTTS TLIDRDGVGT STISIPNMGY PQNPQPMETQ YQLSQSISPY KSGSLESMLY  240
TQENWESLDT IRMHFETNLV DEKGKKQISS ESDVEVNHDD IMNPELWDDM WKKYFNKQLK  300
GIIFGKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-17811522126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g085770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317335e-60CR931733.2 Medicago truncatula chromosome 5 clone mth2-38a4, COMPLETE SEQUENCE.
GenBankCR9541855e-60CR954185.3 Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469147.20.0transcription factor MYB87
TrEMBLA0A072VME40.0A0A072VME4_MEDTR; Myb DNA-binding domain protein
STRINGAES615460.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15637211
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.17e-30myb domain protein 81
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]