PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g084060.3
Common NameMTR_1g084060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 269aa    MW: 30856.9 Da    PI: 5.4374
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g084060.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.65e-092102442155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      + +yp++ee+ +L++ +gL+ +q+ +WF N+R ++
  Medtr1g084060.3 210 RWPYPTEEEKLQLSDMTGLDIKQINNWFINQRKRH 244
                      569*****************************885 PP

2ELK39.71e-13164185122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++LlrKY+gyL++L+qEF+
  Medtr1g084060.3 164 ELKEMLLRKYGGYLSNLRQEFL 185
                      9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.6E-191761IPR005540KNOX1
PfamPF037901.2E-191960IPR005540KNOX1
SMARTSM012561.6E-2364115IPR005541KNOX2
PfamPF037912.9E-2367114IPR005541KNOX2
SMARTSM011883.2E-7164185IPR005539ELK domain
PROSITE profilePS5121311.453164184IPR005539ELK domain
PfamPF037891.2E-10164185IPR005539ELK domain
PROSITE profilePS5007112.341184247IPR001356Homeobox domain
SuperFamilySSF466892.99E-19186256IPR009057Homeodomain-like
SMARTSM003898.7E-13186251IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-27189249IPR009057Homeodomain-like
CDDcd000861.61E-11196248No hitNo description
PfamPF059203.9E-17204243IPR008422Homeobox KN domain
PROSITE patternPS000270222245IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEHNRSDLIR LDMTTDRIIK NQIATHPLYP NLLSAFLECQ KVGAPTELAS LLEEIGRESH  60
PNNAFREIGD DPDLDHFMES YCEVLHRYKE ELSKPLNEAT LFLCNIESQL NELCKGTQTM  120
SSDYNRSDHE AAGTSEDEMS CGKVEAVEGG HDELCGTSCP GDKELKEMLL RKYGGYLSNL  180
RQEFLKKRKK GKLPKDARKA LMDWWNVHYR WPYPTEEEKL QLSDMTGLDI KQINNWFINQ  240
RKRHWKPSED MRFSIMEGVS STGIAGPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179188LRQEFLKKRK
2185189KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g084060.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3638510.0KT363851.1 Pisum sativum line SGE class I knotted-1-like 8 homeobox transcription factor (KNOX8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638687.10.0homeobox protein knotted-1-like 10
SwissprotQ9FP292e-88KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A072VNV20.0A0A072VNV2_MEDTR; Homeobox knotted-like protein
TrEMBLG7I9I10.0G7I9I1_MEDTR; Homeobox knotted-like protein
STRINGAES614720.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-78KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]