PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g083640.1

Common Name

MTR_1g083640

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 287aa MW: 32449.7 Da PI: 6.6271

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g083640.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.6	4e-18	65	172	1	90
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY +YA+++GFs+r+ ++k+ k+++++ ++vC+k+g+++ + + + + ++++e+r+gCka + +k+++ +++ Medtr1g083640.1 65 DFYGNYAYNTGFSIRTMLKSKNnsqnKKSDKVHYVRYVCNKQGFKKGSLLNpnnrptsdsplviEFVKVKEKPEERVGCKAGIYLKLDEvLNVY 158 6***********98655555455689999***********999888999999999999888999***************99* PP FAR1 77 evtkleleHnHela 90 ++++ + H H+l Medtr1g083640.1 159 KIYRWDVAHCHPLH 172 ************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-14	65	172	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDLISTSSES GQLSVETSSL IHAESGQLSV ETSSMIHADS SQCYSPSNEE SWKSLVFQSI 60 KEIEDFYGNY AYNTGFSIRT MLKSKNNSQN KKSDKVHYVR YVCNKQGFKK GSLLNPNNRP 120 TSDSPLVIEF VKVKEKPEER VGCKAGIYLK LDEVLNVYKI YRWDVAHCHP LHKPEHLCYL 180 RSFREVNEIQ GQLALINSKA GMSMRTSYEV LGQGVGGTEN LPFRFSDLKN YLMTIRQKEM 240 VVGEATVIQE FFRNEALSKP SFYYDIQVDA AEDIASIFWA DGIISL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g083640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC147963	0.0	AC147963.2 Medicago truncatula chromosome 1 clone mth2-42e19, complete sequence.
GenBank	AC166898	0.0	AC166898.17 Medicago truncatula clone mth2-70l3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024632961.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	G7I8T1	0.0	G7I8T1_MEDTR; FAR1 DNA-binding domain protein
STRING	AES61431	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14214	2	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-18	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Medtr1g083640.1
Entrez Gene	11411078

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]