PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g083630.1
Common NameMTR_1g083630
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 631aa    MW: 72452.2 Da    PI: 8.7768
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g083630.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+  Ed +l+++v+++G g+W+ + ++  + R++k+c++rw+++l
  Medtr1g083630.1 14 KGAWSLHEDAILKEYVRKYGEGNWDDVKKKTELFRCGKSCRLRWLNHL 61
                     79********************************************97 PP
2Myb_DNA-binding38.52.7e-1267109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g+ T eE++++v+++++ G++ W++  ++++ gRt++++k++w+
  Medtr1g083630.1  67 KGSITREEEQKIVELHAKIGPK-WSLMVQELP-GRTDNEIKNFWN 109
                      57789***************99.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.11965IPR017930Myb domain
SuperFamilySSF466894.79E-2612108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002494.4E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-201568IPR009057Homeodomain-like
CDDcd001679.79E-91661No hitNo description
SMARTSM007171.3E-1066114IPR001005SANT/Myb domain
PROSITE profilePS5129415.29666116IPR017930Myb domain
PfamPF002498.6E-1167109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2069115IPR009057Homeodomain-like
CDDcd001671.29E-771109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MSNSNGSDTI KLKKGAWSLH EDAILKEYVR KYGEGNWDDV KKKTELFRCG KSCRLRWLNH  60
LHPDLKKGSI TREEEQKIVE LHAKIGPKWS LMVQELPGRT DNEIKNFWNI RTRKRTKLGL  120
PLYDQIIKPH DHELNVNREC TLSNKEQADD VSHEVKFKND IFSRKCILVS NGFEPFHASI  180
TQPHFSNMLC NNVANTSPTL TNTDETPFMT NATESYQPQF QGCNSKCYKI VEELPGRRGN  240
EIDNYHNIRT KKRARASLPL YDQIINLCDF ELNDINGETC LDGLSNQHQA HVSQQVHKSD  300
THGSNFEQLS NSCASISNSN TSPTLSSRGA MESDLSPFPE CLDFQSSDES QLHSYSLIHK  360
YPLLPLRSEI PHPMILEHSN ANQMHSSETR LKDCCVWKRL PNWSLVISLS QTQTHQKWRC  420
KTFGGPKLKN FFRSNASKAS KYVSNNVAST SMSPNASSSL INRGETPTMT ATMKSDLPWF  480
QMWNSKWSKT AQEGWKTEAM ESNLPPKPKY LGFQSSESPK LLSNMLLPPF FNTTREKGWN  540
NLWLETDYML VLLAFKSVSM VPWSVRNRWD NYVAITRQMN FIVPHVFKEG NCCAHRSVWM  600
WFTIKLEQIS LEIGLEKKTF IWSLAFGHTI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g083630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1479630.0AC147963.2 Medicago truncatula chromosome 1 clone mth2-42e19, complete sequence.
GenBankAC1668980.0AC166898.17 Medicago truncatula clone mth2-70l3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7I8T00.0G7I8T0_MEDTR; Myb transcription factor
STRINGAES614300.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-48myb domain protein 101
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]