PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g083180.1 | ||||||||
Common Name | MTR_1g083180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 187aa MW: 21505.9 Da PI: 7.9985 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 63 | 105 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W +e + l++++++++G+g W +Ia+++g ++t q+ s+ qk+ Medtr1g083180.1 63 WDEEQHRLFLEGFEKYGKGKWIKIAQHVG-TKTTTQVASHAQKH 105 *****************************.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.198 | 55 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.29E-16 | 56 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-8 | 58 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-7 | 59 | 108 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.8E-12 | 59 | 108 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-11 | 63 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.59E-9 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MYHYSSNQQN YQNTDDNGLA FIDADHVKFP THSDGFISKE NVSADENKVP PLVNKINKGQ 60 YHWDEEQHRL FLEGFEKYGK GKWIKIAQHV GTKTTTQVAS HAQKHFIRIK ESAKLSKIRK 120 RRSIFYTTTT TNNSWDGNFH PLLYRDNIPS PPSPPPNIET ESIVEQILQQ LQQAQEALWN 180 DNVILS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g083180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC161241 | 0.0 | AC161241.18 Medicago truncatula clone mth2-193c3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591133.1 | 1e-138 | transcription factor DIVARICATA | ||||
TrEMBL | G7I8N4 | 1e-136 | G7I8N4_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein | ||||
STRING | AES61384 | 1e-137 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20559 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-16 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g083180.1 |
Entrez Gene | 11410052 |
Publications ? help Back to Top | |||
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