PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g083040.5 | ||||||||
Common Name | MTR_1g083040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 1136aa MW: 127625 Da PI: 9.7635 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 6e-09 | 46 | 82 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E e++++a +++G++ Wk++a+ + +R+ +++ Medtr1g083040.5 46 QWSKGELERFYEAYRKHGKD-WKKVAAAVR-NRSIEMVE 82 6*****************99.*********.***98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.126 | 42 | 95 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 7.03E-10 | 42 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0015 | 43 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-4 | 45 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.4E-8 | 46 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.40E-4 | 47 | 81 | No hit | No description |
SMART | SM01135 | 8.5E-56 | 618 | 719 | IPR033471 | DIRP domain |
Pfam | PF06584 | 1.8E-32 | 618 | 718 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1136 aa Download sequence Send to blast |
MAPTRKSRSV NKRFKNSNDI SPEKDGVGSS KNKQRKKKLS DKLGSQWSKG ELERFYEAYR 60 KHGKDWKKVA AAVRNRSIEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEESDS 120 ERESNDAPGS RKPVKRKREK LQLNVSKDPV QSQSVTSSDG CLSLLKKRRI DGLQPRAVGK 180 RTPRVPVYHS QKKDDRENYV SPNKRSLKST VDGNDDEVEH VAFALSRASQ RGGSPLVSQT 240 PRRRGEQKFS PAQSRDRMRQ MSETARAKFH NASVDGEFLE GSLESRGAEN GEYVRDTSSL 300 MDMEGTSTAG VPKGGKFYRK KERVENVGNY QLDDGGEACS GTEEGLSFNS LKENNMEVTN 360 EKLEQFSPTS QRKRNKKLLF GGNSVNRDVF GDEIHALDAL QTLADLSLMM PSSEVESESC 420 VQLKGERMMV DKDDKSALPE STSTSHKRNK VKIRAVPGPD TSTFKKSKLK DIANDTNALS 480 ESKDQLPFAD KTWKRKPKST VSKAVDDEKK TVIKGKFTDQ VFASPKQIKT VKPSEVLLRA 540 DQKGFAVSTS EIPLLSEVSS PTKKSRRKMI FQRPSMRKEK SYENVLKSQP NKHSTQKEKL 600 SSCLSSYLVR RWFTSEWFYS ALDYPWFAKR EFVEYLNHVG LGNIPRLTRV EWSVIKSSLG 660 KPRRFSEHFL HEERQKLEQY RESVRKHYSE LRNGIRDGLP TDLARPLYVG QRVIAIHPKT 720 REIHDGSVLT VDHDKCRIQF DRPQLGVEFI TDIDCMPLNP LDNMPEALRR QIGARKASFT 780 TIEPHINGNS SFGGCEMHAS PVKVRPSSSA LVKQGKVDAN HVTSQANIGN LCAQAASAQP 840 CKVMQHQSKE ADIHALSELK RALDKKDTLL AELRNANNGI LENQNGIECL KDSEGFKKHY 900 ATVLVELKEA SGQVSDTMLQ LRQRNTYTET SLPPWMKPKA NFEGHDDLPN MLDSSMTQES 960 RSTVIEIIKG SRLQAHAMLD AAFQAWSQAT KEGKDAITKI GQALDSIDYQ QLSSKYRSPV 1020 IRSQDQVNGS YYHANQSTCR ASEPLLNDAS GLKLHKDSDE VEIEIPFELI TSCVATLTMI 1080 QSCTERQYPP ADVAQILDSA VTSLQPCDTR NLPIYREIQM CMGRIKTQIL ALIPT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24232 | 0.0 | flower| leaf| pod| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g083040.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151426 | 0.0 | AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469042.1 | 0.0 | protein ALWAYS EARLY 3 isoform X1 | ||||
Refseq | XP_024638387.1 | 0.0 | protein ALWAYS EARLY 3 isoform X1 | ||||
TrEMBL | A0A072VM38 | 0.0 | A0A072VM38_MEDTR; Always EARLY-like protein | ||||
STRING | AES61372 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1783 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g083040.5 |
Entrez Gene | 11426420 |
Publications ? help Back to Top | |||
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